Locus 4024

Sequence ID 2R_DroMel_CAF1
Location 13,287,026 – 13,287,137
Length 111
Max. P 0.688440
window6488

overview

Window 8

Location 13,287,026 – 13,287,137
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -31.50
Consensus MFE -22.75
Energy contribution -23.64
Covariance contribution 0.89
Combinations/Pair 1.14
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value 0.32
SVM RNA-class probability 0.688440
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13287026 111 - 20766785
AUCCCCCACAUACCACAGCUUUGAUGCCGACUUUGGCUGGAAUCGCUCCUUCUCCGAGCCGGAUCUCACAGGCAAUCAGAAGUCCGGCGAUCUCAGCCGGUUCGCCAUCAA
....................((((((.(((..(((((((..((((((.(((((....(((.(....)...)))....)))))...))))))..))))))).))).)))))) ( -39.00)
>DroPse_CAF1 14715 105 - 1
GUC-CAU-----UUGCAGCUUUGAUGCCGACUUUGGCUGGAAUCGAUCCUUCUCCGAACCCGAUCUUUCUGUCAACCAGAAGCAGGGCGAUCUCAGACGGUUCACCAUCAA
...-...-----........((((((..((((....(((..((((.((((.(..((....))....(((((.....)))))).))))))))..)))..))))...)))))) ( -23.90)
>DroEre_CAF1 14702 102 - 1
AUCU---------CACAGCUUUGAUGCCGACUUUGGCUGGAAUCGUUCCUUCUCCGAGCCGGAUCUCACAGGCAAUCAGAAGUCCGGCGAUCUCAGCCGAUUCGCCAUCAA
....---------.......((((((.(((..(((((((..((((((.(((((....(((.(....)...)))....)))))...))))))..))))))).))).)))))) ( -37.30)
>DroYak_CAF1 14640 106 - 1
AUCCCAC-----CCACAGUUUUGAUGCCGAUUUUGGCUGGAAUCGUUCCUUCUCCGAGCCGGAUCUCACAGCCAAUCAGAAGUCCGGCGAUCUCAGCCGGUUCGCCAUCAA
.......-----........((((((.(((..(((((((..(((..((.......))((((((..((...........))..)))))))))..))))))).))).)))))) ( -36.50)
>DroAna_CAF1 14132 98 - 1
GUC----------CCUAGCUUUGAUGCCGAUUUUGGUUGGAAUCGCUCCUUCUCCGAACCGGAUCUCACAGCUAACCAAAAG---GGAGGACUCAGCCGAUUCACCAUCAA
(((----------(.(((((.(((..(((..(((((..(((.....)))....))))).)))...))).))))).((....)---)..))))................... ( -25.30)
>DroPer_CAF1 14720 105 - 1
GUC-CAU-----UUGCAGCUUUGAUGCCGACUUUGGCUGGAAUCGAUCCUUCUCCGAACCCGAUCUUUCUGUCAACCAGAAGCAGGGCGAUCUCAGACGGUUCGCCAUCAA
...-...-----........((((((.(((..(((.(((..((((.((((.(..((....))....(((((.....)))))).))))))))..))).))).))).)))))) ( -27.00)
>consensus
AUC_CA_______CACAGCUUUGAUGCCGACUUUGGCUGGAAUCGAUCCUUCUCCGAACCGGAUCUCACAGCCAACCAGAAGUCCGGCGAUCUCAGCCGGUUCGCCAUCAA
....................((((((.(((..(((((((..((((((.(((((........(......)........)))))...))))))..))))))).))).)))))) (-22.75 = -23.64 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:52 2006