| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,286,720 – 13,286,810 |
| Length | 90 |
| Max. P | 0.797936 |
| Location | 13,286,720 – 13,286,810 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -22.06 |
| Energy contribution | -22.08 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13286720 90 + 20766785 A-----------------GAAUUGGCUACUCAUCUACUCACAAUCGCAGGUCCUCGGGCGUGUACCAGUGGUAUUUCUCCUGGUGCUCCGACAGCAGCUGCAUGAAU .-----------------...........................((((((..(((((...(((((((..(.....)..))))))))))))..))..))))...... ( -23.90) >DroSec_CAF1 14206 106 + 1 ACAAA-UAUUUAAUUGCCAAAUUGGGUAAUCAUCUACUCACAAUCGCAGGUCCUCGGGCGUGUACCAGUGGUAUUUUUCCUGGUGCUCCGACAGCAGCUGCAUGAAU .....-......((((((......))))))...............((((((..(((((...(((((((.((......))))))))))))))..))..))))...... ( -27.80) >DroSim_CAF1 14234 106 + 1 ACAAA-UAUUUAAUUGCCAAAUUGGGUAAUCAUCUACUCACAAUCGCAGGUCCUCGGGCGUGUACCAGUGGUAUUUCUCCUGGUGCUCCGACAGCAGCUGCAUGAAU .....-......((((((......))))))...............((((((..(((((...(((((((..(.....)..))))))))))))..))..))))...... ( -28.60) >DroEre_CAF1 14383 103 + 1 AAAACUUUUUCUUGU----AUUGGGGUAAUCAGCUACUCACAAGCGCAGGUCCUCGGGCGUGUACCAGUGGUAUUUCUCCUGGUGCUCCGACAGCAGCUGCAUGAAU ..........(((((----....(((((......)))))))))).((((((..(((((...(((((((..(.....)..))))))))))))..))..))))...... ( -29.80) >DroYak_CAF1 14331 93 + 1 ACAAG-UAUUCUAGU----G---------CCAGCUACUCACAAGCGCAGGUCCUCGGGCGUGUACCAGUGGUAUUUCUCCUGGUGCUCCGAGAGCAGCUGCAUGAAU .....-.((((..((----(---------(.((((.(((.(.((((((.(((....))).)))(((((..(.....)..))))))))..).))).)))))))))))) ( -31.70) >DroAna_CAF1 13831 79 + 1 A---------------------------A-UAUUUUCUUACAAUUGCAGAUCCUCGGGGGUGUACCAGUGAUACUUGUCCUGGUGCUCCGACAGCAGCUGCAUGAAU .---------------------------.-..............(((((...((.(..((.(((((((.(((....)))))))))).))..)))...)))))..... ( -25.40) >consensus ACAA__UAUU__A_U____AAUUGGGUAAUCAUCUACUCACAAUCGCAGGUCCUCGGGCGUGUACCAGUGGUAUUUCUCCUGGUGCUCCGACAGCAGCUGCAUGAAU .............................................((((((..(((((...(((((((.((......))))))))))))))..))..))))...... (-22.06 = -22.08 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:51 2006