| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,286,481 – 13,286,574 |
| Length | 93 |
| Max. P | 0.728580 |
| Location | 13,286,481 – 13,286,574 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.65 |
| Mean single sequence MFE | -41.53 |
| Consensus MFE | -28.36 |
| Energy contribution | -29.75 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13286481 93 + 20766785 GCUCCGACUCGUCGAGGAACACCUCGCGUGGCAGUAUCUUGGUGCUGGGAUCCAGCAUA---------AGGUACGAGGAGUUCUUCAUGCCAUCGGUGGGAC-------- ..(((.(((((.(((((....)))))))(((((((((((((.((((((...))))))))---------))))))((((....)))).)))))..))).))).-------- ( -42.80) >DroVir_CAF1 14571 101 + 1 -CUCCUUGUCGUCGCGAAACAUAUCCCGCGGCAGUAUUUGGGCGCUGCUAUCCACCAUGGGAUGCGACAGAUACGAGGAGCUCUUCAUGUUCCCGUCUCCAU-------- -.........(((((............(((((.((......))))))).((((......))))))))).((.(((.(((((.......)))))))).))...-------- ( -31.50) >DroSec_CAF1 13982 93 + 1 GCUCCGACUCGUCGAGGAACACCUCGCGUGGCAGUAUCUUGGUGCUGGGAUCCAGCAUG---------AGGUACGAGGAGUUCUUCAUGCCAUCGGCGGCAC-------- (((((((..((.(((((....)))))))(((((((((((((.((((((...))))))))---------))))))((((....)))).))))))))).)))..-------- ( -44.20) >DroSim_CAF1 14011 93 + 1 GCUCCGACUCGUCAAGGAACACCUCGCGUGGCAGUAUCUUGGUGCUGGGAUCCAGCAUG---------AGGUACGAGGAGUUCUUCAUGCCAUCGGCGGCAC-------- (((((((..(((..(((....))).)))(((((((((((((.((((((...))))))))---------))))))((((....)))).))))))))).)))..-------- ( -38.60) >DroEre_CAF1 14129 93 + 1 GCUCCGACUCGUCGAGGAACACCUCGCGUGGCAGUAUCUUGGUGCUGGGAUCCAGCAUG---------AGGUACGAGGAGUUCUUCAUGCCAUCGGCGGCAC-------- (((((((..((.(((((....)))))))(((((((((((((.((((((...))))))))---------))))))((((....)))).))))))))).)))..-------- ( -44.20) >DroYak_CAF1 14066 101 + 1 GCUCCGACUCGUCGAGGAACACCUCGCGUGGCAGUAUCUUGGUGCUGGGAUCCAGCAUG---------AGGUACGAGGAGUUCUUCAUGCCGUCGGCGGCAUUGAAGCCG ...(((((.((.(((((....))))))).((((((((((((.((((((...))))))))---------))))))((((....)))).)))))))))((((......)))) ( -47.90) >consensus GCUCCGACUCGUCGAGGAACACCUCGCGUGGCAGUAUCUUGGUGCUGGGAUCCAGCAUG_________AGGUACGAGGAGUUCUUCAUGCCAUCGGCGGCAC________ (((((((..((.(((((....)))))))(((((((((((..((((((.....))))))..........))))))((((....)))).))))))))).))).......... (-28.36 = -29.75 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:50 2006