| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,281,724 – 13,281,820 |
| Length | 96 |
| Max. P | 0.649511 |
| Location | 13,281,724 – 13,281,820 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.03 |
| Mean single sequence MFE | -14.98 |
| Consensus MFE | -9.02 |
| Energy contribution | -9.80 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13281724 96 + 20766785 UACGCACCUAGCUUUAACAUUUUCCUAUAUUGUGGUUGCGCUUUCACA--CGCCGCUUAUAUUCUAUAGGAAAAUAAAAUUAAAUCGCUCAAAA-----AUCA ...((.....))......(((((((((((..(((...((((.......--.).)))...)))..)))))))))))...................-----.... ( -17.70) >DroVir_CAF1 9499 99 + 1 AACUUACCUAAAUUCAACAUUGUCCUAUAUUGUGU-GGCGUUGUUAAA--CGCAGCUUAUAUGCUAUAGGAUAAUAAAUAAAAAAUGCGUAAAU-AGCCUGCA ..................(((((((((((..((((-((.(((((....--.)))))))))))..)))))))))))..........((((.....-....)))) ( -20.90) >DroPse_CAF1 9219 102 + 1 UACCCACCUAACUUCAACAUUUUCCUAUAUUGUGUUUGCGUUCA-ACAACUUUUUCUUAUAUUCUAUAGGAAAACAAAUAAAAAUCGCCCAAAAUAGCCAGCA ...................((((((((((..((((.........-.............))))..))))))))))............................. ( -10.15) >DroEre_CAF1 9475 96 + 1 GACGCACCUAGUUUUAACAUUUUCCUAUAUUGUGGUUGCGCUCUCACA--CGCCACUUAUAUUCUACAGGAAAAUAAAAUAAAAUCGCUCAAAA-----AGCA ..........((((((..((((((((((((.(((((((........))--.)))))..)))).....))))))))....)))))).(((.....-----))). ( -15.60) >DroAna_CAF1 8815 99 + 1 AACGCACCAAGCUUUAACAUUUUCCUAUUAUGUGUAUGCGCUUUCACA--CGCCUCUUAAAUUCUAUAGGAAAAUAAAUUAAAAUCGCUCAAAA--GCCAGCA ..........(((.....((((((((((...((.((.(((........--)))....)).))...))))))))))...........(((....)--)).))). ( -15.40) >DroPer_CAF1 9228 102 + 1 UACCCACCUAACUUCAACAUUUUCCUAUAUUGUGUUUGCGUUCA-ACAACUUUUUCUUAUAUUCUAUAGGAAAACAAAUAAAAAUCGCCCAAAAUAGCCAGCA ...................((((((((((..((((.........-.............))))..))))))))))............................. ( -10.15) >consensus UACGCACCUAACUUCAACAUUUUCCUAUAUUGUGUUUGCGCUCUCACA__CGCCUCUUAUAUUCUAUAGGAAAAUAAAUAAAAAUCGCUCAAAA__GCCAGCA ..................(((((((((((..((((..(((..........))).....))))..)))))))))))............................ ( -9.02 = -9.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:49 2006