Locus 4020

Sequence ID 2R_DroMel_CAF1
Location 13,279,953 – 13,280,058
Length 105
Max. P 0.612932
window6484

overview

Window 4

Location 13,279,953 – 13,280,058
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.81
Mean single sequence MFE -27.20
Consensus MFE -15.79
Energy contribution -15.90
Covariance contribution 0.11
Combinations/Pair 1.21
Mean z-score -1.67
Structure conservation index 0.58
SVM decision value 0.16
SVM RNA-class probability 0.612932
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13279953 105 + 20766785
CAAUUAAGUUGCAUAAUUACCCUUAUCCUCGUUGAAUUUCAAUUGGACUUCAGCAACUAACCACUCGAAGGAGUUGGACAAAGAGGAAUCGCCCACGGUCAAGUA
.........(((.............(((((((((((.(((....))).))))))......((((((....))).))).....)))))((((....))))...))) ( -25.50)
>DroPse_CAF1 7447 101 + 1
CGUAUACUC----UCCAUACCUCUAUCCUCGCUGAAUUUCAGCUGGAUAUCAGCCACAAGCCACUCGAAGGAGUUGGACAGCGAAGCAUCGCCCACGGUCAGGUA
.........----....(((((.(((((..((((.....)))).)))))...(((....(((((((....))).))).).((((....))))....))).))))) ( -30.00)
>DroSim_CAF1 7602 105 + 1
CAAUUAGGUUGCAUCAUUACCCUUAUCCUCGUUGAAUUUCAAUUGGACUUCAGCAACCAACCACUCGAAGGAGUUGGACAGAGAGGAAUCGCCCACGGUCAAGUA
......(((.........)))....(((((((((((.(((....))).))))))......((((((....))).))).....)))))((((....))))...... ( -25.90)
>DroYak_CAF1 7412 105 + 1
UAAAUAUCUUGCAAUAUUACCCUUAUCUUCGUUGAAUUUCAAUUGGACAUCAGCAACCAACCACUCGAAGGAGUUGGACAGGGAGGAAUCGCCCACGGUCAAGUA
.......(((((.......((((.......(((((..(((....)))..)))))......((((((....))).)))..)))).((......))...).)))).. ( -23.30)
>DroAna_CAF1 7064 101 + 1
AAAUUAA----GAACAUUACCCUUCUCCUCGUUGAACUUAAGUUGCACUUCUCCUACCAGCCACUCGAAGGAGUUCGACAGGGAGGCAUCACCAACGGUGAAGUA
.......----.............((((..(((((((((.(((.((.............)).))).....)))))))))..))))((.(((((...))))).)). ( -27.42)
>DroPer_CAF1 7456 101 + 1
CGUAUACUC----UCCAUACCUCUAUCCUCGCUGAAUUUCAGCUGGAUAUCAGCCACAAGCCACUCGAAAGAGUUGGACAGCGAAGCAUCGCCCACGGUCAGGUA
.........----....(((((.(((((..((((.....)))).)))))...(((....(((((((....))).))).).((((....))))....))).))))) ( -31.10)
>consensus
CAAAUAAGU__CAUCAUUACCCUUAUCCUCGUUGAAUUUCAAUUGGACAUCAGCAACCAACCACUCGAAGGAGUUGGACAGAGAGGAAUCGCCCACGGUCAAGUA
.....................(((..(((((((((..(((....)))..)))))......((((((....))).))).....))))....(((...))).))).. (-15.79 = -15.90 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:48 2006