Locus 402

Sequence ID 2R_DroMel_CAF1
Location 2,398,410 – 2,398,527
Length 117
Max. P 0.602354
window790

overview

Window 0

Location 2,398,410 – 2,398,527
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 75.95
Mean single sequence MFE -45.63
Consensus MFE -20.85
Energy contribution -21.60
Covariance contribution 0.75
Combinations/Pair 1.27
Mean z-score -1.93
Structure conservation index 0.46
SVM decision value 0.14
SVM RNA-class probability 0.602354
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2398410 117 + 20766785
GCGAGGCUCAAUUUGCCUCGCAGCUUUUUGGCCAGUUGGCCAAGUCCCAGUCCGGCCGGAACAUCGUUUUCUCCCCAUCUUCCAUCCGGACGGGCUUGGCCCUAGCCUACCUGGGCG
(((((((.......))))))).((((...(((.((..(((((((.(((.((((((..((((.((.(........).)).))))..)))))))))))))))))).))).....)))). ( -57.30)
>DroPse_CAF1 7931 117 + 1
GCGAUGGAAAGUUUUCCUUAGAGCUUUUCGGACACCUGGCGAAGUCGGAGGCUGGUGGAAAUCUUGUGUUCUCGCCGUCGUCUAUCAGGACAGGCCUGGCUUUGGCCUACCUAGGCU
((((((((((((((......)))))))))((((...((((((....(((.((.(((....)))..)).)))))))))..)))))))(((..(((((.......))))).)))..)). ( -39.80)
>DroSec_CAF1 54718 100 + 1
GCGAGGCUCAA-----------------UGGCCAGUUGGCCAAGUCCCAGUCUGGCCGGAACAUUGUCCUCUCCCCAUCGUCCAUCCGGACGGGCUUGGCCCUAGCUUACCUGGGCG
.....(((((.-----------------.((..(((((((((((.(((.((((((..(((....((.........))...)))..))))))))))))))))..))))..))))))). ( -40.70)
>DroEre_CAF1 12167 117 + 1
GCGAGGCUCAAUUUGCCUUGAAGCUCUUUGGCCAGUUGGCCAAGUCCGAGUCCGGCCGGAACAUCGUCCUCUCUCCAUCGUCCAUCCGGACAGGCCUGGCCAUAGCCUACCUGGGCG
.((((((.......))))))........((((((...((((.((..(((.(((....)))...)))..)).........((((....)))).))))))))))..((((....)))). ( -46.40)
>DroYak_CAF1 11725 117 + 1
GCGAGGCAAAAUUUGCCCUGCAGCUGUUUGGCCAACUGGCCAAGUCCGAGUCCGACCGGAACAUCGUCCUCUCUCCAUCGUCCAUCCGGACGGGCUUGGCACUAGCCUACCUGGGCG
(((.((((.....)))).))).......(((((....)))))((((((((((((.(((((....((............))....))))).))))))))).))).((((....)))). ( -50.00)
>DroPer_CAF1 7935 117 + 1
GCGAUGGAAAGUUUUCCUUAGAGCUUUUCGGACACCUGGCGAAGUCGGAGGCUGGUGGAAAUCUCGUGUUCUCGCCGUCGUCUAUCAGGACAGGCCUGGCUUUGGCCUACCUAGGCU
((((.(((((((((......)))))))))(((((((((((...))))).....(((....)))..)))))))))).(((((((....))))(((((.......))))).....))). ( -39.60)
>consensus
GCGAGGCAAAAUUUGCCUUGCAGCUUUUUGGCCAGCUGGCCAAGUCCGAGUCCGGCCGGAACAUCGUCCUCUCCCCAUCGUCCAUCCGGACAGGCCUGGCCCUAGCCUACCUGGGCG
..........................(((((((....))))))).....((((((........................((((....))))(((((.......)))))..)))))). (-20.85 = -21.60 +   0.75) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006