Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,398,410 – 2,398,527 |
Length | 117 |
Max. P | 0.602354 |
Location | 2,398,410 – 2,398,527 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.95 |
Mean single sequence MFE | -45.63 |
Consensus MFE | -20.85 |
Energy contribution | -21.60 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.27 |
Mean z-score | -1.93 |
Structure conservation index | 0.46 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2398410 117 + 20766785 GCGAGGCUCAAUUUGCCUCGCAGCUUUUUGGCCAGUUGGCCAAGUCCCAGUCCGGCCGGAACAUCGUUUUCUCCCCAUCUUCCAUCCGGACGGGCUUGGCCCUAGCCUACCUGGGCG (((((((.......))))))).((((...(((.((..(((((((.(((.((((((..((((.((.(........).)).))))..)))))))))))))))))).))).....)))). ( -57.30) >DroPse_CAF1 7931 117 + 1 GCGAUGGAAAGUUUUCCUUAGAGCUUUUCGGACACCUGGCGAAGUCGGAGGCUGGUGGAAAUCUUGUGUUCUCGCCGUCGUCUAUCAGGACAGGCCUGGCUUUGGCCUACCUAGGCU ((((((((((((((......)))))))))((((...((((((....(((.((.(((....)))..)).)))))))))..)))))))(((..(((((.......))))).)))..)). ( -39.80) >DroSec_CAF1 54718 100 + 1 GCGAGGCUCAA-----------------UGGCCAGUUGGCCAAGUCCCAGUCUGGCCGGAACAUUGUCCUCUCCCCAUCGUCCAUCCGGACGGGCUUGGCCCUAGCUUACCUGGGCG .....(((((.-----------------.((..(((((((((((.(((.((((((..(((....((.........))...)))..))))))))))))))))..))))..))))))). ( -40.70) >DroEre_CAF1 12167 117 + 1 GCGAGGCUCAAUUUGCCUUGAAGCUCUUUGGCCAGUUGGCCAAGUCCGAGUCCGGCCGGAACAUCGUCCUCUCUCCAUCGUCCAUCCGGACAGGCCUGGCCAUAGCCUACCUGGGCG .((((((.......))))))........((((((...((((.((..(((.(((....)))...)))..)).........((((....)))).))))))))))..((((....)))). ( -46.40) >DroYak_CAF1 11725 117 + 1 GCGAGGCAAAAUUUGCCCUGCAGCUGUUUGGCCAACUGGCCAAGUCCGAGUCCGACCGGAACAUCGUCCUCUCUCCAUCGUCCAUCCGGACGGGCUUGGCACUAGCCUACCUGGGCG (((.((((.....)))).))).......(((((....)))))((((((((((((.(((((....((............))....))))).))))))))).))).((((....)))). ( -50.00) >DroPer_CAF1 7935 117 + 1 GCGAUGGAAAGUUUUCCUUAGAGCUUUUCGGACACCUGGCGAAGUCGGAGGCUGGUGGAAAUCUCGUGUUCUCGCCGUCGUCUAUCAGGACAGGCCUGGCUUUGGCCUACCUAGGCU ((((.(((((((((......)))))))))(((((((((((...))))).....(((....)))..)))))))))).(((((((....))))(((((.......))))).....))). ( -39.60) >consensus GCGAGGCAAAAUUUGCCUUGCAGCUUUUUGGCCAGCUGGCCAAGUCCGAGUCCGGCCGGAACAUCGUCCUCUCCCCAUCGUCCAUCCGGACAGGCCUGGCCCUAGCCUACCUGGGCG ..........................(((((((....))))))).....((((((........................((((....))))(((((.......)))))..)))))). (-20.85 = -21.60 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006