Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,271,514 – 13,271,627 |
Length | 113 |
Max. P | 0.999990 |
Location | 13,271,514 – 13,271,627 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 69.66 |
Mean single sequence MFE | -19.43 |
Consensus MFE | -14.38 |
Energy contribution | -13.17 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.30 |
Mean z-score | -2.44 |
Structure conservation index | 0.74 |
SVM decision value | 5.58 |
SVM RNA-class probability | 0.999990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13271514 113 - 20766785 GAAAAGCAAGAGUUUAAUAAAUCUAUUUAUAUGAAUGGAUUAAUUGAAACCACAACAUAUUAGCAAGAA--GCAUCUGUUAAACCGCAUCUUUAUUGAAACUAAAAAUUUGCUCA ....((((((..((((((.(((((((((....))))))))).))))))..)........((((((.((.--...))))))))..........................))))).. ( -18.20) >DroSec_CAF1 3079 93 - 1 -------AAUAGUGUAAGAAAUCCAUUUAUAAUAAUGGAUUA---------------CAUUAGCAAAUAAAUAGGUUGGGAAACCGCAUCUCUAUUUAAUCUAAUCAUUUACUGA -------..(((((...(.((((((((......)))))))).---------------)(((((....((((((((.(((....)))....))))))))..)))))....))))). ( -21.10) >DroSim_CAF1 3085 92 - 1 -------AAUAGUGUAAGAAAUCCAUUUAUAUUAAUGGAUUA---------------UA-UAGCAAAUAAAUUGGUUGGGAAACCGCAUCUCUAUUUAAUCUAAUCAUUUACUAA -------..(((((...((((((((((......)))))))).---------------..-.......(((((.((((((....))).)))...)))))......))...))))). ( -19.00) >consensus _______AAUAGUGUAAGAAAUCCAUUUAUAUUAAUGGAUUA_______________UAUUAGCAAAUAAAUAGGUUGGGAAACCGCAUCUCUAUUUAAUCUAAUCAUUUACUAA .........(((((.....((((((((......)))))))).....................((.(((......)))((....))))......................))))). (-14.38 = -13.17 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:45 2006