Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,265,973 – 13,266,064 |
Length | 91 |
Max. P | 0.813413 |
Location | 13,265,973 – 13,266,064 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.21 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -16.11 |
Energy contribution | -16.83 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.68 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13265973 91 + 20766785 AAU--UU-CACAACA---UCCAC-UAGCCACAACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACUAUCAGUCCGGAUUAUGCGGUUCUGGUG ...--..-.......---.....-..((((.((((((.....((((.....(((....)))....))))..(((......)))...)))))).)))). ( -23.40) >DroVir_CAF1 2653 91 + 1 AAU--UGGCUUCGCGUAC----A-CAGCCACAACUGCGAUCAUGGCGCUGAUGGUCAACCAAUAUGCGACCAUUAGUCCGGAUUAUGCGGUGCUCGUC ...--.(((.((((((((----.-(((......))).)(((.(((.((((((((((...........))))))))))))))))))))))).))).... ( -30.20) >DroSim_CAF1 338 92 + 1 AAU--UU-CACAACA---UCUAUUUAGCCACAACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACUAUCAGUCCGGAUUACGCGGUCCUGGUG ...--..-.......---........((((..(((((.....((((.....(((....)))....))))..(((......)))...)))))..)))). ( -22.50) >DroEre_CAF1 2087 91 + 1 AAU--UU-CACAACA---UCCAC-UAGCCACUACCGCCAUCAUGGCCCUAAUGGUCAACCAGUAUGCCACCAUCAGUCCGGAUUACGCGGUGCUGGUA ...--..-.......---.....-..((((.((((((.....((((.....(((....)))....))))((........)).....)))))).)))). ( -24.60) >DroYak_CAF1 2100 91 + 1 AAU--UU-CAUAAUA---UCCAC-UAGCCACUACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACGAUUAGUCCGGAUUAUGCGGUGCUGGUG ...--..-.......---..(((-((((....(((((.(((.((((.....(((....)))....)))).)))((((....)))).)))))))))))) ( -26.80) >DroAna_CAF1 2421 93 + 1 AACGUUC-UACUGUC---UUCCC-UAGCCACCACUGCUAUCAUGGCCCUAAUGGUCAACCAGUAUGCCACUAUUAAUCCGGACUAUGCUGUUCUCUUG ...((..-(((((..---.....-((((.......))))...(((((.....)))))..))))).))............((((......))))..... ( -14.60) >consensus AAU__UU_CACAACA___UCCAC_UAGCCACAACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACUAUCAGUCCGGAUUAUGCGGUGCUGGUG ..........................((((..(((((.....((((.....(((....)))....))))((........)).....)))))..)))). (-16.11 = -16.83 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:44 2006