Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,262,877 – 13,262,968 |
Length | 91 |
Max. P | 0.859110 |
Location | 13,262,877 – 13,262,968 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 76.47 |
Mean single sequence MFE | -24.69 |
Consensus MFE | -14.86 |
Energy contribution | -15.28 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.36 |
Mean z-score | -1.75 |
Structure conservation index | 0.60 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13262877 91 - 20766785 CUAGCCAGUGGAGCUGCCAGCUAUCAUUUGAAAUUCAAGUAAAGUUGGCAGCCCCCU----GGCGUCUGAAAAAUAGCGCG-AAG--UGAAGUAA----ACU ...(((((.((.((((((((((...(((((.....)))))..)))))))))).))))----))).................-...--........----... ( -34.70) >DroSec_CAF1 2044 91 - 1 CUAAACAGUGUAGCUGCCAGCUGUCAUUUAAAAUUCAAGUAAAGUUGGCAGCCCCUU----GGCGUCUGAAAAAUAGCGCG-AAA--GGAAGAAA----ACU ............((((((((((...((((.......))))..)))))))))).((((----.(((.(((.....)))))).-.))--))......----... ( -26.10) >DroSim_CAF1 1839 91 - 1 CUAAACAGUGUAGCUGCCAGCUGUCAUUUAAAAUUCAAGUAAAGUUGGCAGCCCCUU----GGCGUCUGAAAAAUAGCGCG-AAA--GGAAGAAA----ACU ............((((((((((...((((.......))))..)))))))))).((((----.(((.(((.....)))))).-.))--))......----... ( -26.10) >DroEre_CAF1 2044 93 - 1 CUAAGCAGUGUUGCUGCCUGCUGUCAUUUUAAAUUCAAGUAAAGUUGGCAGCCCCCU----AGCGUCUGAAAAAUUGCGCGGAAA--GGAAAAAAA---UCU ....((((.....))))..((((((((((((........))))).)))))))..(((----.((((..........))))....)--)).......---... ( -21.40) >DroYak_CAF1 2051 91 - 1 CUGAGCAGUGUAGUUGUCUUCUGUCAUUUUAAAUUCAACUGAAGUUGGCAGCCCCCU----GGCGUCUGAAAAUUAGCGCG-AAA--GGAAGAAA----ACU ...........((((.(((((((((((((((........))))).))))))...(((----.(((.((((...))))))).-..)--)))))).)----))) ( -19.20) >DroAna_CAF1 2091 93 - 1 ----GCACUGCAA----CAAUUGUCAUUCAUUAUUUUUCAAAAGUUGGCAGUGCUCUCGGAAGCGUCCAAAAAAUAGCGCG-AAGGAGGACAUAAGUUUGCA ----(((((((((----(..(((...............)))..))).)))))))((((....((((..........)))).-...))))............. ( -20.66) >consensus CUAAGCAGUGUAGCUGCCAGCUGUCAUUUAAAAUUCAAGUAAAGUUGGCAGCCCCCU____GGCGUCUGAAAAAUAGCGCG_AAA__GGAAGAAA____ACU ............((((((((((....................))))))))))..........((((..........))))...................... (-14.86 = -15.28 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:43 2006