Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,262,630 – 13,262,738 |
Length | 108 |
Max. P | 0.671225 |
Location | 13,262,630 – 13,262,738 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -21.78 |
Energy contribution | -23.82 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.22 |
Mean z-score | -1.55 |
Structure conservation index | 0.70 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13262630 108 - 20766785 AAAAGAUGCGUCUGUUUGACAACAUUCAGGAGUCGGAGGAAGAAAGUUUUUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCAACCGAAG ......(((.((.(((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))))).)))....... ( -31.00) >DroSec_CAF1 1796 108 - 1 AAAAGAUGCGCCUGUUUGACAACAUUCAGGAGUCGGAGGAGGAGAGUUUUUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCGACCGAAG ........((((((((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))).)))))....... ( -33.50) >DroSim_CAF1 1591 108 - 1 AAAAGAUGCGCCUGUUUGACAACAUUCAGGAGUCGGAGGAGGAGAGUUUUUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCGACCGAAG ........((((((((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))).)))))....... ( -33.50) >DroEre_CAF1 1797 108 - 1 AAAAGAUGCGCCUGUUUGACAACAUUCAUGAGUCGGAGGAGGAGAGUUUCUCUGAAUACUCGGACACAGAAUCGGACUACAAGUACCAAUCGAGCGAGGCAAAUGAUG .........((((((((((....((((.((.(((.(((..((((.....)))).....))).))).)))))).((((.....)).))..)))))).))))........ ( -30.90) >DroYak_CAF1 1794 108 - 1 AAAAGAUGCGCCUGUUUGACCACAUUCACGAGACGGAGGAGGAGAGCUUCUCCGAAUACUCGGACACAGAAUCGGAGUACAGGGACGAGUCGAGCGGGGCGACUGAUG ...((.(((.(((((((((((............((((((((.....))))))))..(((((.((.......)).))))).......).))))))))))))).)).... ( -38.70) >DroAna_CAF1 1875 90 - 1 AAAAGCUACGACUCUUUGAUGACAUCCAGGAAUCGGAGGAUGACAGCUACUCGGAGUACUCAGAUACGGAAUCCGACUAUA------------------CUCCCAAUG ...((((.....((((((((..(.....)..)))))))).....))))....((((((.((.(((.....))).))...))------------------))))..... ( -20.00) >consensus AAAAGAUGCGCCUGUUUGACAACAUUCAGGAGUCGGAGGAGGAGAGUUUCUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCGACCGAAG .........(((((((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))).))))........ (-21.78 = -23.82 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:42 2006