Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,257,021 – 13,257,138 |
Length | 117 |
Max. P | 0.768991 |
Location | 13,257,021 – 13,257,138 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -17.16 |
Energy contribution | -18.35 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.15 |
Mean z-score | -2.01 |
Structure conservation index | 0.56 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13257021 117 - 20766785 ---AAUAUUUACCGCAUCUUUUCCGAAGAUUUCGUGCACUGCGUAGACAUAAAAGUCAAUGAGCUCCAGGAUGCAAGCCACAAUCUUGGGAGAGAUGCAGUGCAAUAACUUGCACAUCUG ---..........(((((((((((.((((((..(((...(((((.(((......)))..((.....))..)))))...)))))))))))))))))))).((((((....))))))..... ( -37.90) >DroVir_CAF1 2199 120 - 1 AAUCCUUCUUACCGCAUCCCUGCCGAAUAUCUCAUGCACUGCAUACGCAUAAAAAUCAAGCAACUCCAGCAUGCACGAUACUAUCUUUGGCGAGAUGCAGUGCAGCAGCUUGCACAUUUG .............(((...((((.((.....)).((((((((((.(((...........(((.........))).(((........))))))..))))))))))))))..)))....... ( -31.50) >DroWil_CAF1 1938 120 - 1 UGAUUCACUUACCGCAUCUUUCCCAAAGAUCUCAUGCACUGCAUAGGCAUAAAAAUCAAUCAACUCCAGCAUGCAAGAGACAAUUUUCGGUGAGAUGCAAUGUAACAGUUUGCACAUCUG .............(((((((.((.((((.((((.((((.(((..((.................))...))))))).))))...)))).)).)))))))..(((((....)))))...... ( -25.83) >DroMoj_CAF1 2355 120 - 1 AUCUCUACUUACAGCAUCCUUGCCAAAGAUCUCAUGCACUGCAUAGGCAUAAAAGUCGAGCAGCUCCAGCAUGCUCGCCACUAUCUUGGGCGAGAUGCAGUGCAGCAGCUUGCACAUCUG .............(((((.(((((.(((((...((((.((....))))))....(.((((((((....)).)))))).)...))))).)))))))))).((((((....))))))..... ( -41.10) >DroAna_CAF1 2228 115 - 1 -----CACUUACUGCAUCUUUGCCAAAGAUUUCAUGCACAGCAUAAACAUAAAAAUCAAUCAACUCCAGCAUGCAGGAAACAAUCUUGGGAGAAAUACAGUGCAACAGUUUGCACAUUUG -----.......((.((.(((.((((.((((.(((((...............................)))))..(....))))))))).))).)).))((((((....))))))..... ( -19.88) >DroPer_CAF1 2348 117 - 1 ---CUUACUUACCGCGUCCUUGCCAAAGAUCUCGUGAACAGCGAACGCGUAAAAAUCAAUAAGCUCCAGCAUGCAGGACACAAUCUUAGGAGAGAUGCAGUGCAGAAGUUUGCACAUUUG ---..........(((((.(..((.(((((...(((..(.((....))..............((........)).)..))).))))).))..)))))).((((((....))))))..... ( -27.00) >consensus ___CCUACUUACCGCAUCCUUGCCAAAGAUCUCAUGCACUGCAUAGGCAUAAAAAUCAAUCAACUCCAGCAUGCAAGACACAAUCUUGGGAGAGAUGCAGUGCAACAGCUUGCACAUCUG .............(((((....((.(((((.((.((((.(((..........................))))))).))....))))).))...))))).((((((....))))))..... (-17.16 = -18.35 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:41 2006