Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,254,694 – 13,254,795 |
Length | 101 |
Max. P | 0.934978 |
Location | 13,254,694 – 13,254,795 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -13.54 |
Energy contribution | -15.35 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.17 |
Mean z-score | -2.12 |
Structure conservation index | 0.59 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13254694 101 + 20766785 CUGUAGACAAUGAUGUACCUAUUUUCUAGGUACUAUAACUUUAUAUAUUUUUUAACACUGCAAGUAGCUUUAGCAAUGCUUGCGGAUGCUGGUCACACUCG .(((.(((......(((((((.....)))))))........................(((((((((((....))..)))))))))......)))))).... ( -26.00) >DroSec_CAF1 1902 101 + 1 CUGUAGACAAUGAUUUACCUAUUUUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGCAGCUUUUGCAAUGCUUGCGGAUGCUGGUCACACUUG .(((.(((.......((((((.....)))))).........................(((((((((((....))..)))))))))......)))))).... ( -25.10) >DroSim_CAF1 1896 76 + 1 C-------------------------UAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGUAGCUUUAGCAUUGCUUGCGGAUGCUGGUCACACUUG .-------------------------.((((......))))..........(((.(((((((((((((....))..))))))))).)).)))......... ( -17.40) >DroYak_CAF1 1929 100 + 1 CAACAGUCAAUGAUGUACCUAUUUUCUAGGUACGCCAAUUGUAUUUCUUUUCUAACACUGAAUUUAGCUUUGGCAUUGGUUGU-GAUGCUGGUCACACUUG ..(((..((((...(((((((.....)))))))(((((..((..(((............)))....)).)))))))))..)))-(((....)))....... ( -23.00) >consensus CUGUAGACAAUGAUGUACCUAUUUUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGUAGCUUUAGCAAUGCUUGCGGAUGCUGGUCACACUUG ..............(((((((.....)))))))..................(((.(((((((((((((....))..))))))))).)).)))......... (-13.54 = -15.35 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:40 2006