Locus 4009

Sequence ID 2R_DroMel_CAF1
Location 13,247,557 – 13,247,677
Length 120
Max. P 0.586619
window6470

overview

Window 0

Location 13,247,557 – 13,247,677
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.39
Mean single sequence MFE -29.57
Consensus MFE -21.01
Energy contribution -21.40
Covariance contribution 0.39
Combinations/Pair 1.22
Mean z-score -1.02
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.586619
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13247557 120 - 20766785
UCAAAAAGAUAUCCGGUUACCAGUUAUCUGCCCAUGAUGGUCGGCUCGUCGGCCAUGGCCACCUCGUCGUUGGGCGCCUUGGCACCCUUCUUCUUGCCAGAAUACCAGAGGAACAUAACA
......(((((.(.((...)).).)))))(((....((((((((....)))))))))))..((((......(((.((....)).)))...((((....)))).....))))......... ( -33.00)
>DroPse_CAF1 6239 100 - 1
U--------------------UAUUAUCUGCCCAUUAUAGUUGGCUCGUCCGCCAUGGCCACCUCGUCAUUGGGCGCCUUGGCACCCUUCUUCUUGCCAGAAUACCACAGGAACAUUAGA
.--------------------.....((((((((.......((((......))))((((......)))).)))))...((((((..........)))))).........)))........ ( -23.20)
>DroGri_CAF1 7101 100 - 1
C----------------U----AUUAUCUGCCCAUUAUGGUGGGCUCGUCCGCCAUGGCAACCUCAUCAUUGGGGGCCUUAGCGCCUUUUUUCUUACCAGAAUACCAGAGGAACAUAACA
.----------------.----......((((....((((((((....)))))))))))).((((......(((.((....)).)))...((((....)))).....))))......... ( -28.80)
>DroMoj_CAF1 9439 104 - 1
G----------------UGGAAGCUAUCUGCCCAUUAUGGUUGGCUCAUCGGCCAUGGCAACUUCAUCAUUGGGCGCCUUGGCGCCUUUCUUCUUACCUGAAUACCAGAGGAACAUGACA
.----------------..((((.....((((....((((((((....)))))))))))).)))).((((.((((((....))))))(((((((............))))))).)))).. ( -31.00)
>DroAna_CAF1 6153 120 - 1
CCCAAUUUAUGGUCUGGGCCAUGUUAUCUGCCCAUGAUGGUGGGCUCAUCCGCCAUUGCCACCUCAUCAUUGGGUGCCUUGGCGCCUUUUUUCUUGCCCGAGUACCAGAGGAACAUAACA
.((......((((((((((..........((((((....)))))).....(((((..((.(((.((....)))))))..)))))...........)))).)).))))..))......... ( -38.20)
>DroPer_CAF1 6264 100 - 1
U--------------------UAUUAUCUGCCCAUUAUUGUUGGCUCGUCCGCCAUGGCCACCUCGUCAUUGGGCGCCUUGGCACCCUUCUUCUUGCCAGAAUACCACAGGAACAUUAGA
.--------------------.....((((((((.......((((......))))((((......)))).)))))...((((((..........)))))).........)))........ ( -23.20)
>consensus
U________________U___UAUUAUCUGCCCAUUAUGGUUGGCUCGUCCGCCAUGGCCACCUCAUCAUUGGGCGCCUUGGCACCCUUCUUCUUGCCAGAAUACCAGAGGAACAUAACA
.............................(((....((((((((....)))))))))))..((((......(((.((....)).)))...(((......))).....))))......... (-21.01 = -21.40 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:35 2006