| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,241,893 – 13,242,013 |
| Length | 120 |
| Max. P | 0.541922 |
| Location | 13,241,893 – 13,242,013 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -31.65 |
| Consensus MFE | -21.80 |
| Energy contribution | -22.28 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13241893 120 - 20766785 CUCCGCACUUUCAGCCAAAGUCUCUUGGUUUUCCCUGCCUUUUGUGAGCAAAAGUCGUAGGUUCUUGAGUAAUGCCGAGAUUUCCUCCUCAUUUUCGGUUAUGCUCAGGCGCACGAGCUU (((.((......((((((......))))))...(((((((((((....))))))..)))))..((((((((..(((((((............)))))))..)))))))).))..)))... ( -35.30) >DroSec_CAF1 32 120 - 1 CUCCACACUUCCAGCCAAAGUCUCUUGGUUUUCCCUGCCUUUUGUGAGCAAAAGCCGUAGGUUCUUAAGUACUGCCGAAAUUUCCUCCUCAUUUUCGGUUAUGCUCAGGCUCACGAGCUU ............((((((......))))))...(((((((((((....))))))..)))))......((((..(((((((............)))))))..)))).(((((....))))) ( -29.10) >DroSim_CAF1 830 120 - 1 CUCCACACUUCCAGCCAAAGUCUCUUGGUUUUCCCUGCCUUUUGUGAGCAAAAGUCGUAGGUUCUUGAGUAAUGCCGAAAUUUCCUCCUCAUUUUCGGUUAUUCUCAAGCUCACGAGCUU (((.........((((((......))))))...(((((((((((....))))))..)))))..((((((....(((((((............)))))))....)))))).....)))... ( -31.20) >DroEre_CAF1 340 120 - 1 CUCCACACUUUCGGCCAACGUCUCCUGAUUUUUCCCGCCUUUUGUGAGCAACAGUCGUAGGUUCUUGAGUAUUGCCGAAAUUUCCUCCUCAUUUUCGGUUAUGCUUAGGCUCACGAGCUU ...........(((..((.(((....))).))..)))...((((((((((((........))).((((((((.(((((((............))))))).)))))))))))))))))... ( -30.40) >DroYak_CAF1 833 120 - 1 CUCCACACUUCCGGCCAAAGACUCCUGAUUUUCUCUGCCUUUUGUGAGCAACAAUCGUAGGUUCUUGAGUAAUGCCGCAAUUUCCUCCUCAUUUUCGGUUAUGCUCAGGCUCACAAGCUU ............(((...(((..........)))..))).((((((((((((........))).(((((((..((((.((............)).))))..))))))))))))))))... ( -25.90) >DroPer_CAF1 44 120 - 1 CGCUGAAUUUUUUGCCACAGUCUCUUGAGCGGUGCUGCUUUUGGUGAGCAGAAGGCGCAGGCUCUUGAGCAGUCCUGUGACCUCCUCCGCAUUUUCGGGCAGGCUUAAGCCAACAAUCCG ............((((....((....))((((.(((((((.....)))))).((((((((((((....).)).)))))).))).).)))).......))))(((....)))......... ( -38.00) >consensus CUCCACACUUCCAGCCAAAGUCUCUUGAUUUUCCCUGCCUUUUGUGAGCAAAAGUCGUAGGUUCUUGAGUAAUGCCGAAAUUUCCUCCUCAUUUUCGGUUAUGCUCAGGCUCACGAGCUU .......................((((......(((((((((((....))))))..)))))..((((((((..(((((((............)))))))..))))))))....))))... (-21.80 = -22.28 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:32 2006