| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,241,606 – 13,241,715 |
| Length | 109 |
| Max. P | 0.978420 |
| Location | 13,241,606 – 13,241,715 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -24.46 |
| Consensus MFE | -16.28 |
| Energy contribution | -17.48 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13241606 109 - 20766785 ----GGAGUGUGGCCACACUGCGCUCCACAAAAGAAAACAAAAGAAAAGGGAGA-AAAGCAAUUUCGUUUUGGGAA--AUUUUCUAAGUCAUGUAGCAAACGAAACGCUACAGCGA---- ----((((((..(.....)..))))))...............((((((......-(((((......))))).....--.))))))...((.((((((.........))))))..))---- ( -27.00) >DroSim_CAF1 543 109 - 1 ----GGAAUGCGGUCACACUGCACUCCACAAAAGAAAACAAAAGAAAAGGGAGA-AAAGCAAUUUCGUUUUGGGAA--AUUUACUAAGUCAUGUAGAAAACAAAACGCUACAGCGA---- ----(((.(((((.....))))).)))...........................-...((.....(((((((....--.(((((........)))))...))))))).....))..---- ( -22.10) >DroEre_CAF1 53 109 - 1 ----UGAGUGCGGUCACACUGCACUCCACAAAAGAAAACAAAAGAAAAGGGAGA-AAAGCAAUUUCGUUUUGGAAA--AUUGACUAAGUCAUGUAGCAAACAAAACGCUGCAGCGA---- ----.((((((((.....))))))))............(((((((((..(....-....)..)))).)))))....--..((((...))))((((((.........))))))....---- ( -24.80) >DroYak_CAF1 546 109 - 1 ----GGAGUGCGGUCACACUGCACUCCGCAAAAGAAAACAAAAGAAAAGGGAGA-AAAGCAAUUUCGUUUUGGAAA--AUUGACUAAGUCAUGUAGCAAACAGAACGCUGCACCGC---- ----(((((((((.....)))))))))((................((((.((((-.......)))).))))((...--..((((...))))((((((.........))))))))))---- ( -30.50) >DroAna_CAF1 163 111 - 1 UCCAUAAAUACGGUCGCGCU-------AAAAAAGAAAAAGAAAGAAAAACAACAAAAAGGGAUCAACUUUUGCAAUAUAUUUAAAAAGUCAUGUAGCAAACAAA--GCUACAUCGACUGG ..........((((((....-------............................(((((......)))))...................(((((((.......--))))))))))))). ( -17.90) >consensus ____GGAGUGCGGUCACACUGCACUCCACAAAAGAAAACAAAAGAAAAGGGAGA_AAAGCAAUUUCGUUUUGGAAA__AUUUACUAAGUCAUGUAGCAAACAAAACGCUACAGCGA____ ....(((((((((.....)))))))))............................(((((......)))))....................((((((.........))))))........ (-16.28 = -17.48 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:31 2006