Locus 4005

Sequence ID 2R_DroMel_CAF1
Location 13,240,337 – 13,240,446
Length 109
Max. P 0.708422
window6465

overview

Window 5

Location 13,240,337 – 13,240,446
Length 109
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.67
Mean single sequence MFE -27.60
Consensus MFE -19.15
Energy contribution -20.27
Covariance contribution 1.12
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.37
SVM RNA-class probability 0.708422
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13240337 109 - 20766785
AUAAAAACGAUCUCAUUCUCAGUUUGCAGCAGAAACUGCGCGAGGAGAUGAACGAGAAGGAGCAGCUGAGAGAAGCUAUGAAGUAGGAU--AACAAUUUCUU---------UUACAAAUG
..........((((.(((((..(((((.((((...)))))))))..)).))).))))......((((......))))..(((((.(...--..).)))))..---------......... ( -22.60)
>DroPse_CAF1 21014 120 - 1
AUAAAAACGAUCUCAUACUCAGUUUGCAGCAAAAACUCCGUGAGGAGAUGAGCGAAAAGGAGCAGCUCAGGGAGGCAUUAAAGUGAGUUUGAACAAAUAGUUGGGAACUACUUAAAUUAG
............(((.(((((.((((..((.....((((....)))).(((((...........))))).....))..)))).))))).)))......(((.(....).)))........ ( -30.10)
>DroPer_CAF1 21056 120 - 1
AUAAAAACGAUCUCAUACUCAGUUUGCAGCAAAAACUCCGUGAGGAGAUGAGCGAAAAGGAGCAGCUCAGGGAGGCAUUAAAGUGAGUUUGAACAAAUAGUUGGGAACUACUUAAAUUAG
............(((.(((((.((((..((.....((((....)))).(((((...........))))).....))..)))).))))).)))......(((.(....).)))........ ( -30.10)
>consensus
AUAAAAACGAUCUCAUACUCAGUUUGCAGCAAAAACUCCGUGAGGAGAUGAGCGAAAAGGAGCAGCUCAGGGAGGCAUUAAAGUGAGUUUGAACAAAUAGUUGGGAACUACUUAAAUUAG
............(((.(((((.((((..((.....((((....)))).(((((...........))))).....))..)))).))))).)))............................ (-19.15 = -20.27 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:30 2006