| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,236,328 – 13,236,425 |
| Length | 97 |
| Max. P | 0.861973 |
| Location | 13,236,328 – 13,236,425 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 97.25 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -25.39 |
| Energy contribution | -25.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13236328 97 + 20766785 AGCAACAAUUACCCGCAGACACAACAGCCAUGAUGAGUGUGCUGGGCGAGGAGCACCCACUCGAUUCGCCCACCCAACCACCUCCUGCCCCGCCCAC .(((..........(((.((.((.((....)).)).)).)))(((((((((((......)))..)))))))).............)))......... ( -24.60) >DroSec_CAF1 16672 96 + 1 AGCAACAAUUACCCGCAGACACAACAGCCAUGAUGAGUGGGCUGGGCGA-GAGCACCCACUCGAUUCGCCCACCCAUCCACCUCCUGCCCCGCCCAC ..............((((......((....)).((..((((.(((((((-(((......)))...)))))))))))..))....))))......... ( -28.20) >DroSim_CAF1 17961 97 + 1 AGCAACAAUUACCCGCAGACACAACAGCCAUGAUGAGUGGGCUGGGCGAGGAGCACCCACUCGAUUCGCCCACCCAUCUACCUCCUGCCCCGCCCAC ..............((((...((.((....)).)).(((((.(((((((((((......)))..))))))))))))).......))))......... ( -28.50) >consensus AGCAACAAUUACCCGCAGACACAACAGCCAUGAUGAGUGGGCUGGGCGAGGAGCACCCACUCGAUUCGCCCACCCAUCCACCUCCUGCCCCGCCCAC ..............((((......((....)).((..((((.(((((((.(((......)))...)))))))))))..))....))))......... (-25.39 = -25.50 + 0.11)
| Location | 13,236,328 – 13,236,425 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 97.25 |
| Mean single sequence MFE | -42.03 |
| Consensus MFE | -39.97 |
| Energy contribution | -40.63 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13236328 97 - 20766785 GUGGGCGGGGCAGGAGGUGGUUGGGUGGGCGAAUCGAGUGGGUGCUCCUCGCCCAGCACACUCAUCAUGGCUGUUGUGUCUGCGGGUAAUUGUUGCU (..((((.(((((..((((..(((.(((((((...((((....)))).))))))).).))..))))....))))).))))..).((((.....)))) ( -39.40) >DroSec_CAF1 16672 96 - 1 GUGGGCGGGGCAGGAGGUGGAUGGGUGGGCGAAUCGAGUGGGUGCUC-UCGCCCAGCCCACUCAUCAUGGCUGUUGUGUCUGCGGGUAAUUGUUGCU (..((((.(((((..((((..(((((((((((...((((....))))-))))))).))))..))))....))))).))))..).((((.....)))) ( -44.60) >DroSim_CAF1 17961 97 - 1 GUGGGCGGGGCAGGAGGUAGAUGGGUGGGCGAAUCGAGUGGGUGCUCCUCGCCCAGCCCACUCAUCAUGGCUGUUGUGUCUGCGGGUAAUUGUUGCU (..((((.(((((..(...(((((((((((........((((((.....))))))))))))))))).)..))))).))))..).((((.....)))) ( -42.10) >consensus GUGGGCGGGGCAGGAGGUGGAUGGGUGGGCGAAUCGAGUGGGUGCUCCUCGCCCAGCCCACUCAUCAUGGCUGUUGUGUCUGCGGGUAAUUGUUGCU (..((((.(((((..(((((.(((((((((((...((((....)))).))))))).)))).)))))....))))).))))..).((((.....)))) (-39.97 = -40.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:26 2006