Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,230,378 – 13,230,468 |
Length | 90 |
Max. P | 0.819058 |
Location | 13,230,378 – 13,230,468 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -16.55 |
Energy contribution | -17.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.79 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13230378 90 + 20766785 AAUC-------------------UAGAAUGUGUUUAUUAACUAUUAAUAAGUGUUUCCUGCACAAUUGUAUUUUCUGCUAUUGUUAAUGGUUCGAUAUACGCAAGAUCA-- .(((-------------------(....(((((.((((((((((((((((((((.....))))....(((.....)))..)))))))))))).)))).)))))))))..-- ( -21.50) >DroSec_CAF1 10834 111 + 1 AAUCUGAAUACUGUAUUAAACACUAGAAUGUGUUUAUUAACUAUUAAUAAGUGUUUCCUGCACAAUUGUAUUUCCUCCUAUUGUUAAUGGUUUGAAAUACGCAAGAUAAAG .((((.((((...((.(((((((......))))))).))..)))).....((((.....))))....(((((((..((..........))...)))))))...)))).... ( -20.80) >DroSim_CAF1 12100 111 + 1 AAUCUGAAUACUAUAUUAAACACUAGAAUGUGUUUAUUAACUAUUAAUAAGUGUUUCCUGCACAAUUGUUUUCCCUGCUAUUGUUAAUGGUUUGAAAUACACAAGAUAAAG .((((...........(((((((......)))))))..((((((((((((((((.....))))....((.......))..))))))))))))...........)))).... ( -20.50) >consensus AAUCUGAAUACU_UAUUAAACACUAGAAUGUGUUUAUUAACUAUUAAUAAGUGUUUCCUGCACAAUUGUAUUUCCUGCUAUUGUUAAUGGUUUGAAAUACGCAAGAUAAAG ............................(((((.....((((((((((((((((.....))))....(((.....)))..))))))))))))......)))))........ (-16.55 = -17.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:21 2006