Locus 3999

Sequence ID 2R_DroMel_CAF1
Location 13,227,165 – 13,227,264
Length 99
Max. P 0.880970
window6455

overview

Window 5

Location 13,227,165 – 13,227,264
Length 99
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 85.53
Mean single sequence MFE -26.62
Consensus MFE -21.74
Energy contribution -23.52
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -2.34
Structure conservation index 0.82
SVM decision value 0.92
SVM RNA-class probability 0.880970
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13227165 99 + 20766785
CAUU------AAGCGAAGACAAGGCCGGAAAAGUCCCAUCGAAAGUGGAAAAUGGAAUGCCAAGCUGACGGAGUCUUGA----AAAAAAGAUAUCCGUUGCACACAGUU
....------.......(((..(((..........(((.(....))))..........)))..((.(((((((((((..----....))))).)))))))).....))) ( -23.45)
>DroSec_CAF1 7756 103 + 1
CAUC------AAGCGAAGACAAGGCCGGAAAAGUCCCAUCGAAAGUGGGAAAUGGAAUGCCAAGCUGGCGGAGUCUUGAAAAAUAAAAAGAUAUCCGUUGCACACAGUU
....------..((((.......(((((.....(((((.(....))))))..(((....)))..)))))((((((((..........))))).))).))))........ ( -30.00)
>DroSim_CAF1 8745 99 + 1
CAUCCAUUCCAACCAAAGACAAGGCCGGAAAAGUCCCAUCGAAAGUGGGAAAUGGAAUGCCAAGCUGGCGGA----------AAAAAAAGAUAUCCGUUGCACACAGUU
..((((((((..((........))..))))...(((((.(....))))))..)))).......((.((((((----------...........))))))))........ ( -26.40)
>consensus
CAUC______AAGCGAAGACAAGGCCGGAAAAGUCCCAUCGAAAGUGGGAAAUGGAAUGCCAAGCUGGCGGAGUCUUGA___AAAAAAAGAUAUCCGUUGCACACAGUU
.................(((..(((........(((((.(....))))))........)))..((.(((((((((((..........))))).)))))))).....))) (-21.74 = -23.52 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:20 2006