Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,223,836 – 13,223,933 |
Length | 97 |
Max. P | 0.999548 |
Location | 13,223,836 – 13,223,933 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.34 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -20.07 |
Energy contribution | -21.32 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.12 |
Mean z-score | -3.87 |
Structure conservation index | 0.55 |
SVM decision value | 3.71 |
SVM RNA-class probability | 0.999548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13223836 97 + 20766785 AGAGUUUUCUCAAAGUAUCUUUUGC--UUUUGGCUC------GGACACAGCCGAGCAAAAAAAAAUAUUGAAGGAGGUAACGUUCUC-AACGUUGCUUUCUUUGGG .(((....)))((((((.....)))--)))..((((------((......))))))...........(..(((((((((((((....-.)))))))))))))..). ( -34.20) >DroSec_CAF1 4473 95 + 1 AGAGUUUUCUCAAAGUAUCUAUUGGU-UUUUGGCUC------GGACGCAGCCGAGCAAA---AAUUAUUGAAGGAGGUAACGUUCUC-AACGUUGCUUUCUUUGGG .(((....)))...........((((-(((((.(((------((......)))))))))---)))))(..(((((((((((((....-.)))))))))))))..). ( -34.80) >DroSim_CAF1 5418 95 + 1 AGAGUUUUCUCAAAGUAUCUUUUGGU-UUUUGGCUC------GGACGCAGCCGAGCCAA---AAUUAUUGAAGGAGGCAACGUUCUC-AACGUUGCUUUCUUUGGG ........(((((((..(((((..((-(((((((((------((......)))))))))---))..))..)))))((((((((....-.))))))))..))))))) ( -40.40) >DroAna_CAF1 8388 106 + 1 UGAGACUUGUUGGCUUUUCUCUUGCUUUUUUGGCCCGGAGACGGACACAGCCGAGCUAAAAUGUUGGUUGGAGGAGCAAAGAAACGCGGGCGUUGCUUUCUUUGGG .(((...((((.((.(((((.(((((((((((..(((....))).))(((((.(((......)))))))))))))))))))))).)).))))...)))........ ( -36.50) >consensus AGAGUUUUCUCAAAGUAUCUUUUGCU_UUUUGGCUC______GGACACAGCCGAGCAAA___AAUUAUUGAAGGAGGUAACGUUCUC_AACGUUGCUUUCUUUGGG .(((....))).................(((((((.............)))))))............(..(((((((((((((......)))))))))))))..). (-20.07 = -21.32 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:17 2006