| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,208,644 – 13,208,736 |
| Length | 92 |
| Max. P | 0.767918 |
| Location | 13,208,644 – 13,208,736 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 82.18 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -15.85 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13208644 92 - 20766785 UUAUACUUAAUUAAUGAUAAUUGACAGUCCAAGUCACUCGGAGAAAGAGUGUCGAUUCUGUCAGUUA-GGAUUUUGGCUUUAUA---AAGCACAUA---- .....(..((((.....((((((((((.....(.(((((.......))))).)....))))))))))-.))))..)((((....---)))).....---- ( -24.20) >DroSec_CAF1 2651 92 - 1 UAAUACUUAAUUAAUGAUAAUUGACAGUCCAAGUCACACGGAGAAAGAGUGUCGAUUCUGUCAGUUA-GGAUUUUGGCUUUAUA---AAGCACAUA---- .....(..((((.....((((((((((....((((((((.........)))).))))))))))))))-.))))..)((((....---)))).....---- ( -20.40) >DroSim_CAF1 2523 92 - 1 UAAUACUUAAUUAAUGAUAAUUGACAGUCCAAGUCACUCGGAGAAAGAGUGUCGAUUCUGUCAGUUA-GGAUUUUGGCUUUAUA---AAGCACAUA---- .....(..((((.....((((((((((.....(.(((((.......))))).)....))))))))))-.))))..)((((....---)))).....---- ( -24.20) >DroEre_CAF1 2646 88 - 1 UAAU----AAUUAAUGAUAAUUGGCAGCCCAAGUCACUCGGAGAAAGAGUGUCGAUUCUGUCAGUUA-GGAUUUUGGCUUUAUA---AAGCACAUA---- ....----.....(((.((((((((((.....(.(((((.......))))).)....))))))))))-........((((....---)))).))).---- ( -22.60) >DroYak_CAF1 2705 92 - 1 UAGU----AAUUAAUGAUAAUUGACGGUCCAAGUCACUCGGAGAAAGAGUGUCGAUUCUGUCAGUUG-GGAUUUAGGCUUUAUA---AAGCACAUAUGUA ....----.....(((.((((((((((.....(.(((((.......))))).)....))))))))))-........((((....---)))).)))..... ( -22.90) >DroAna_CAF1 3428 90 - 1 UG----UUAAUUAAUGAUAAUUGACAUUCCGGGUCCC----AAAAAACGUGUCGAUUUUGGCGGCUACGGUUUUUGGUUUUAUUCGAUGGCGUAGG--UU ((----(((((((....)))))))))...(((((.((----(((((.(((((((.......)))).))).)))))))....)))))..........--.. ( -21.40) >consensus UAAU__UUAAUUAAUGAUAAUUGACAGUCCAAGUCACUCGGAGAAAGAGUGUCGAUUCUGUCAGUUA_GGAUUUUGGCUUUAUA___AAGCACAUA____ .................((((((((((.....(.(((((.......))))).)....)))))))))).........((((.......))))......... (-15.85 = -16.38 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:12 2006