| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,188,943 – 13,189,047 |
| Length | 104 |
| Max. P | 0.852714 |
| Location | 13,188,943 – 13,189,047 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -11.05 |
| Energy contribution | -12.22 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13188943 104 + 20766785 UACGCAAAUUUUACAUCAAAUUAAAUUACAAUA--CAAGCUAAGU----AAAAAAGACGCAACAGCU-CUGCUUCCUAUCUUUCGGAUGCGUUUCAAACGCAUC--CGAGACU ...((...((((((...................--........))----)))).(((.((....)))-))))........((((((((((((.....)))))))--))))).. ( -23.73) >DroPse_CAF1 3106 113 + 1 UAAACAAUUAAUACAUACAAUUAAAUUAUAUUAGGGACGCUAACAUAUAAAAAAUGGUGCAACAGCUUCUGCGCCGUACUCUUGAGACGCGUUUCAAACGCAUCCCCGAAGCU ..............................(..((((.((.............((((((((........))))))))....((((((....))))))..)).))))..).... ( -24.20) >DroSec_CAF1 2253 105 + 1 UACGCAAAUUUUACAUCAAAUUAAAUUACAAUA--CAAGCUAAGU----AAAAAAGACGCAACAGCUUCUGCUCCCUAUCUUUCAGAUGCGUUUCAAACGCAUC--CGACACU ...((...((((((...................--........))----)))).(((.((....)).)))))..........((.(((((((.....)))))))--.)).... ( -16.43) >DroEre_CAF1 2209 105 + 1 UACUCAAAUUUUACAUCAAACUAAAUUACAAUA--CAAGCUAAGU----AAAAAAGAUGCAACAGCUUUUGCUCCCUAUCUUUCGGAUGCGUUUCAAACGCAUC--CGACACU ........((((((...................--........))----))))((((((....(((....)))...))))))((((((((((.....)))))))--))).... ( -22.53) >DroYak_CAF1 2176 105 + 1 UAAUCAAAUUUUACAUCAAAUUAAAUUACAAUA--CAAGCUAAGU----AAAAAAGAUGCAACAGCUUCGGCUCCCUAUCUUUCGAAUGCGUUUCAAACGCAUC--CGACACU ........((((((...................--........))----))))((((((....(((....)))...))))))(((.((((((.....)))))).--))).... ( -18.53) >DroPer_CAF1 3142 113 + 1 UAAACAAUUAAUACAUACAAUUAAAUUAUAUUAGGGACGCUAACAUAUAAAAAAUGGUGCAACAGCUUCUGCGCCGUACUCUUGAGAUGCGUUUCAAACGCAUCCCCGAAGCU .................................(((.................((((((((........))))))))........(((((((.....))))))))))...... ( -25.50) >consensus UAAACAAAUUUUACAUCAAAUUAAAUUACAAUA__CAAGCUAAGU____AAAAAAGAUGCAACAGCUUCUGCUCCCUAUCUUUCAGAUGCGUUUCAAACGCAUC__CGACACU ....................................................(((((((....(((....)))...)))))))..(((((((.....)))))))......... (-11.05 = -12.22 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:06 2006