Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,186,285 – 13,186,376 |
Length | 91 |
Max. P | 0.979959 |
Location | 13,186,285 – 13,186,376 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -18.11 |
Consensus MFE | -11.09 |
Energy contribution | -11.40 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.15 |
Mean z-score | -2.66 |
Structure conservation index | 0.61 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13186285 91 + 20766785 UUAAAAACUAAGUUUCACUGUCACAGUUAAACCAAAAACACAACUAAUAAAAACUGUUUUAGGUGAUGAAACUGCGACAGCAGACAAUAGA ...........((((..(((((.(((((..(((.((((((..............)))))).))).....))))).))))).))))...... ( -20.24) >DroSim_CAF1 81089 91 + 1 UUAAAAACUAAGUUUCACUGUCACAGUUAAACCAAAAACACAACUAAUAAAAACUGUUUUUAGUGAUGAAACUGCGACAGCAGACAAUAGA ...........((((..(((((.(((((..((.(((((((..............))))))).)).....))))).))))).))))...... ( -17.84) >DroEre_CAF1 81363 91 + 1 UUAAAAACUAAGUUUCACUGUCACAGUCGAACCAAAAACACAACUAAUCAAAACUGUCUUUAGUGAUGAAACUGCGACAGCAGACAAUAGA ...........((((.((((...)))).))))...........(((.(((..((((....))))..)))..((((....))))....))). ( -15.40) >DroYak_CAF1 82303 91 + 1 UUAAAAACUAAGUUUUACUGUCACAGUCAAACCAAAAACACAUCUAAUCAAAACUGUUUUCAGUGAUGAAACUGCGACAGCAGACAAUAGA ...........((((.((((...)))).))))..........((((.(((..((((....))))..)))..((((....))))....)))) ( -17.10) >DroAna_CAF1 78204 89 + 1 UUAAAAACUAGGAUU-ACGGCCACAGUAAAGCCUAAAACACGAUUAAUCAAAAUUGUUUUUAGUGGAGAAACUGUGGC-GUAUACAGUAGA ......(((.(...(-(((.(((((((....(((((((.((((((......)))))))))))..))....))))))))-)))..))))... ( -22.60) >DroPer_CAF1 76166 88 + 1 UUAUUAACUAGGAC-AACUGCCGCAAUACAACUACAAACACGCAUGAUAAAAAAUGUGUUUAGCUAUG-AACUGGGGCAGCAGACGAUGG- ..............-..(((((.((................((((........))))(((((....))-))))).)))))..........- ( -15.50) >consensus UUAAAAACUAAGUUUCACUGUCACAGUAAAACCAAAAACACAACUAAUAAAAACUGUUUUUAGUGAUGAAACUGCGACAGCAGACAAUAGA .......(((.......(((((.((((...((..((((((..............))))))..))......)))).))))).......))). (-11.09 = -11.40 + 0.31)
Location | 13,186,285 – 13,186,376 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -21.98 |
Energy contribution | -21.96 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.45 |
Mean z-score | -3.53 |
Structure conservation index | 0.90 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13186285 91 - 20766785 UCUAUUGUCUGCUGUCGCAGUUUCAUCACCUAAAACAGUUUUUAUUAGUUGUGUUUUUGGUUUAACUGUGACAGUGAAACUUAGUUUUUAA .(((...((.((((((((((((.....(((.((((((..............)))))).)))..))))))))))))))....)))....... ( -24.64) >DroSim_CAF1 81089 91 - 1 UCUAUUGUCUGCUGUCGCAGUUUCAUCACUAAAAACAGUUUUUAUUAGUUGUGUUUUUGGUUUAACUGUGACAGUGAAACUUAGUUUUUAA .(((...((.((((((((((((.....((((((((((..............))))))))))..))))))))))))))....)))....... ( -26.44) >DroEre_CAF1 81363 91 - 1 UCUAUUGUCUGCUGUCGCAGUUUCAUCACUAAAGACAGUUUUGAUUAGUUGUGUUUUUGGUUCGACUGUGACAGUGAAACUUAGUUUUUAA .(((...((.((((((((((((.....((((((((((..............))))))))))..))))))))))))))....)))....... ( -26.24) >DroYak_CAF1 82303 91 - 1 UCUAUUGUCUGCUGUCGCAGUUUCAUCACUGAAAACAGUUUUGAUUAGAUGUGUUUUUGGUUUGACUGUGACAGUAAAACUUAGUUUUUAA .(((.....(((((((((((((.....((..((((((((((.....)))).))))))..))..))))))))))))).....)))....... ( -28.40) >DroAna_CAF1 78204 89 - 1 UCUACUGUAUAC-GCCACAGUUUCUCCACUAAAAACAAUUUUGAUUAAUCGUGUUUUAGGCUUUACUGUGGCCGU-AAUCCUAGUUUUUAA ...((((..(((-((((((((.......((((((((.(((......))).)).)))))).....))))))).)))-)....))))...... ( -19.30) >DroPer_CAF1 76166 88 - 1 -CCAUCGUCUGCUGCCCCAGUU-CAUAGCUAAACACAUUUUUUAUCAUGCGUGUUUGUAGUUGUAUUGCGGCAGUU-GUCCUAGUUAAUAA -.....(.(.((((((.((((.-.((((((((((((..............)))))..))))))))))).)))))).-).)........... ( -21.04) >consensus UCUAUUGUCUGCUGUCGCAGUUUCAUCACUAAAAACAGUUUUGAUUAGUUGUGUUUUUGGUUUAACUGUGACAGUGAAACUUAGUUUUUAA ..........((((((((((((.....((((((((((..............))))))))))..))))))))))))................ (-21.98 = -21.96 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:03 2006