Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,166,052 – 13,166,164 |
Length | 112 |
Max. P | 0.868994 |
Location | 13,166,052 – 13,166,164 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -31.92 |
Consensus MFE | -24.65 |
Energy contribution | -25.15 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.77 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13166052 112 - 20766785 UUAAACUCCUUUCUUAUUUGUAUUGCU--------UUUAUAUUUUGCAGGUGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUACUCUGC ...........................--------..........(((((((((((((....)))))))).........((((((..((((((.......))))))))))))...))))) ( -34.20) >DroSec_CAF1 60247 112 - 1 UUUAACUCCUUUCUUAUUUGUAUUGCU--------UUUAUAUUUGGCAGGAGGUGGUCGUCGGGCCACUAGAAUGACUUUGGCCACCGCGGUAUCCAUUUGGCUGCUGGCCAUACUCUGC .....(((((.((.....((((.....--------..))))...)).)))))((((((....))))))......((...((((((..(((((.........)))))))))))...))... ( -32.00) >DroSim_CAF1 60981 112 - 1 UUUAACUCCUUUCUUAUUUGUAUUGCU--------UUUAUAUUUGGCAGGAGGUGGUCGUCGCGCCACUAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUACUCUGC .....(((((.((.....((((.....--------..))))...)).)))))(((((......)))))......((...((((((..((((((.......))))))))))))...))... ( -30.40) >DroEre_CAF1 60901 112 - 1 AUUAACUCCUUUCUCAUUUGCAUUGCU--------UUUGAAUUUUUCAGGAGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACAGCGGUUUCUAUUUGGCUGCUGGCCAUUCUCUGC .............((((((.......(--------(((((.....))))))(((((((....))))))).))))))...((((((((((.(........).)))).))))))........ ( -35.60) >DroWil_CAF1 77851 112 - 1 --------UAUUUUUACCUGUAUAAAUGUGAAAAUUAUUAAUUAAAUAGGAGGUGGUCGUCGAGCGACUCAUAUGACUUUGGCCAUUGCUGUAUCUAUUUGGCUUUUGGCCAUACUUUGC --------.((((((((.(......).)))))))).............(((((((((((.....)))).))).......((((((..((((........))))...))))))..)))).. ( -25.40) >DroYak_CAF1 61698 106 - 1 UUUACCUCCCCUCUCAUUUGCAU--------------UGAAUUUUUCAGGAGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUUCUCUGC ...((((((......((((....--------------.))))......))))))(((((((((....)).).)))))).((((((..((((((.......))))))))))))........ ( -33.90) >consensus UUUAACUCCUUUCUUAUUUGUAUUGCU________UUUAAAUUUUGCAGGAGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUACUCUGC ..............................................((((.(((((((....)))))))..........((((((..((((((.......))))))))))))...)))). (-24.65 = -25.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:57 2006