Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,145,223 – 13,145,328 |
Length | 105 |
Max. P | 0.745904 |
Location | 13,145,223 – 13,145,328 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.60 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -13.08 |
Energy contribution | -13.63 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.13 |
Structure conservation index | 0.48 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13145223 105 + 20766785 CGGA-AAUGCCAGAGU----UUCUGCA----CGACUGCAAUGGGUGGAAAAACAUGUUCCAGAAAUGUAUGUACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU .((.-..(((((.(((----(((((..----...(..(.....)..)....((((((..((....)).....)))))).)))))))).)))))....))............... ( -26.80) >DroSec_CAF1 39017 106 + 1 CGGCAUAUGCCCGAGU----UUCUGCA----CGACCGCAAUGGGUGGAAAAACAUGUUCCAGAAAUGUAUGUACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU .(((((.((((..(((----(((((..----...((((.....))))....((((((..((....)).....)))))).))))))))..)))).)))))............... ( -34.40) >DroSim_CAF1 40806 106 + 1 CGGCAUAUGCCUGAGU----UUCUGCU----CGACCGCAAUGGGUGGAAAAACAUGUUCCAGAAAUGUAUGUACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU .(((((.((((..(((----(((((.(----(.(((......))).))...((((((..((....)).....)))))).))))))))..)))).)))))............... ( -35.40) >DroEre_CAF1 39580 85 + 1 UAA--AACCCC---------UUCUGCA----CGACCGCAAUGGGUGGAAAAACAUGUUCCAGC--------------UACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU ...--.((((.---------...(((.----.....)))..))))((((.......))))(((--------------(.......(((((((....)))))))..))))..... ( -19.30) >DroYak_CAF1 39898 100 + 1 CGA--AGUCCCUCACUUCACUUCUGCA----CGAGCGCAAUGGGUGGAGAAACAUGUUCCAGC--------UACAGCUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU ...--.((((..........(((((..----..(((....(((.(((((.......))))).)--------))..))).)))))...(((((....)))))))))......... ( -27.30) >DroAna_CAF1 39153 94 + 1 CGA--AAGCCA-UCAC----AUAUGCAGCAGCAACCGCAAUGGGUGGAAAAACAUGUUCCAGCAA-------------ACUGAAAUUAUAGCAAAUGCCAUGGACGGCUAAUUU ...--.((((.-((.(----((..(((...((..((((.....))))............(((...-------------.)))........))...))).))))).))))..... ( -20.60) >consensus CGA__AAUCCC_GAGU____UUCUGCA____CGACCGCAAUGGGUGGAAAAACAUGUUCCAGAAA______UACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU ....................(((((........(((......)))((((.......))))...................))))).(((((((....)))))))........... (-13.08 = -13.63 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:56 2006