Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,134,021 – 13,134,119 |
Length | 98 |
Max. P | 0.636205 |
Location | 13,134,021 – 13,134,119 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.10 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -15.26 |
Energy contribution | -15.32 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.39 |
Mean z-score | -1.29 |
Structure conservation index | 0.68 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13134021 98 - 20766785 UGGCUCUGAUUAUAUCUAAUGUGGGCUAAGUUUAAAAUGUGGGAAUUCAUUGAGUAAUUAAGUGAAUUGCUUGAGAAUUCUUAUCUCAAUUCAGGCAC ((((((..((((....))))..)))))).((((.((.(((((((((((.(..(((((((.....)))))))..))))))))))...)).)).)))).. ( -24.30) >DroSec_CAF1 27908 98 - 1 UGGCUCUGAUUAUAUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAAUUCAUUGAGUAAUUAAGCGAAUUGCUUGAGAAUUCUUAUCUCACUUCAGGCAC ..((.((((...........((((((((.............(((((((.(..(((((((.....)))))))..)))))))))))))))).)))))).. ( -26.61) >DroSim_CAF1 29757 97 - 1 UGACUCUGAUUAUAUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAACUCAUUGAGUAAUUAAGUGAAUUGCUUGAGAAUUCUUAUCUCACUACGGGCA- ..............(((...((((((((((.....((((.(....).))))((((((((.....)))))))).......))))))))))...)))..- ( -21.50) >DroEre_CAF1 28433 98 - 1 UGGCUCUGAUUGUCUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAACUCAUUGAGCAAUUAAGUGAAUUGUUUGAGAAUUCUUAUCUCACUACAGGCAG ..........(((((.....((((((((((.....((((.(....).))))((((((((.....)))))))).......))))))))))...))))). ( -24.60) >DroYak_CAF1 28531 98 - 1 UGGCUCUGAUUAUCUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAAUUUGUUGAGUAAUUGAGUGAAUUGUUUAAGAAUUCUUAUCUCACUACGGGCAG ..((((...(((((((......)))))))((.......((((((((((.((((((((((.....))))))))))))))))))))......)))))).. ( -21.52) >DroPer_CAF1 27300 79 - 1 GGGCGUUUAUUACCCUUGAUGGGAGAUAACUCAAAAAUCCG-AAAUUGAUUGAGCCAUUG--UAGAUUGCU------------UCUCACG---GGCU- (((...(((((.(((.....))).)))))))).........-..........((((..((--.(((.....------------)))))..---))))- ( -15.80) >consensus UGGCUCUGAUUAUAUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAAUUCAUUGAGUAAUUAAGUGAAUUGCUUGAGAAUUCUUAUCUCACUACAGGCA_ ..((.(((((((....))))((((((((((.....((((........))))((((((((.....)))))))).......))))))))))..))))).. (-15.26 = -15.32 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:50 2006