Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,120,733 – 13,120,824 |
Length | 91 |
Max. P | 0.842889 |
Location | 13,120,733 – 13,120,824 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -24.96 |
Consensus MFE | -13.34 |
Energy contribution | -13.53 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -2.00 |
Structure conservation index | 0.53 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13120733 91 + 20766785 UGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGGUUGAGCAACUAAAGA--GGGAU--AGUUAGUUAAUAACCU---AGGAUCCAAAUGUUCAA---CUGA .((((.(((((((.....)))))))))))..((((((((((.((....)--)((((--..((((........))---)).))))...)))))))---))). ( -33.10) >DroSec_CAF1 14815 87 + 1 AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGGUUGAGCAACUAAAGA--GGGAU--AGU----CAUUAACCU---AGGCUCAAGUUGUUCAA---AUGA .((((.(((((((.....)))))))))))..((.((((((((((...((--(...(--((.----.......))---)..))).))))))))))---.)). ( -29.90) >DroSim_CAF1 17165 87 + 1 AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGGUUGAGCAACUAAAGA--GACAU--AGU----UAUUAACCU---AGGCUCAAGUUGUUCCA---AUGA .((((.(((((((.....)))))))))))..((...((((((((...((--(...(--((.----.......))---)..))).))))))))..---.)). ( -28.10) >DroEre_CAF1 14968 90 + 1 AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGAUUGAGCAACUAAAACA-CGGGAAGGGU----UAUUAACCU---ACAAUCAAAAUGUUCAA---AUGA .((((.(((((((.....)))))))))))..((.(((((((.((......-..))..((((----.....))))---..........)))))))---.)). ( -24.20) >DroYak_CAF1 14841 88 + 1 AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGUCGAUUGAGCAACUGAAAAA-AGGAA--UGU----UAUUAACCA---AGAAUCAAAAUGUUCAA---AUGA .((((.(((((((.....))))))))))).(((.(((((((..(((....-.((..--...----......)).---....)))...)))))))---.))) ( -22.60) >DroAna_CAF1 15218 90 + 1 AGGAAUUGGUGCCUUCUUGGCCCUCUUCUGACGAUUAAGGAGCUGCAAAAAAGGAU--A-U----UAUUAAGAGGAUAUAAUAAGAAU----AAAGGAUGU .((((..((.(((.....)))))..))))...............(((.........--.-(----(((((........))))))....----......))) ( -11.85) >consensus AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGAUUGAGCAACUAAAAA__GGGAU__AGU____UAUUAACCU___AGAAUCAAAAUGUUCAA___AUGA .((((.(((((((.....)))))))))))........................................................................ (-13.34 = -13.53 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:44 2006