Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,112,860 – 13,112,950 |
Length | 90 |
Max. P | 0.539355 |
Location | 13,112,860 – 13,112,950 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 86.31 |
Mean single sequence MFE | -20.03 |
Consensus MFE | -13.71 |
Energy contribution | -14.17 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.17 |
Mean z-score | -2.09 |
Structure conservation index | 0.68 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13112860 90 + 20766785 CCUCAAGGGAAUGUUCUUAUGGGAAUAGGACUGUUGGAUAAACGACAAAUGAAUAUGUAUAUGUACUAUAUAUCUUGUGGUGAAUCAAAC ...(((.((..((((((....))))))...)).)))(((..((.((((..((.((((((.......)))))))))))).))..))).... ( -16.60) >DroSec_CAF1 6892 83 + 1 CCUCAAGGGAAUA-------GGAAAUAGGCCUGUUGGAUAAACGAUAAAUGUAUGUGCAUAUGCACUAUAUAUCUUUUGAGGAAUCAAAC (((((((((((((-------((.......)))))).............((((((((((....)))).)))))))))))))))........ ( -24.40) >DroSim_CAF1 7229 83 + 1 CCUCAAGGGAAUA-------GGAAAUAGGCCUGUUGGAUAAACGAUAAAUGUAUGUGUAUAUGUACUAUAUAUCUUUUGGGGAAUCAAAC (((((((((((((-------((.......)))))).............(((((((.(((....)))))))))))))))))))........ ( -19.10) >consensus CCUCAAGGGAAUA_______GGAAAUAGGCCUGUUGGAUAAACGAUAAAUGUAUGUGUAUAUGUACUAUAUAUCUUUUGGGGAAUCAAAC ((((((((((.....................(((((......))))).(((((.((((....))))))))).))))))))))........ (-13.71 = -14.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:42 2006