Locus 3974

Sequence ID 2R_DroMel_CAF1
Location 13,106,015 – 13,106,117
Length 102
Max. P 0.633414
window6414

overview

Window 4

Location 13,106,015 – 13,106,117
Length 102
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 73.56
Mean single sequence MFE -21.55
Consensus MFE -14.23
Energy contribution -14.27
Covariance contribution 0.03
Combinations/Pair 1.29
Mean z-score -1.10
Structure conservation index 0.66
SVM decision value 0.21
SVM RNA-class probability 0.633414
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13106015 102 + 20766785
UGAGCGCUUUAGAGCUUUGCCGGUGUCUGGUAUUGCUCUCUAUUUAUUAAAAUCUUUUAAAGUAACUGU-UAUUUCUUGUUCCUAGCACGCUAUCCUGGCAGC
...(((((..(((((..((((((...))))))..))))).....................((.(((...-........))).)))))..(((.....))).)) ( -20.30)
>DroSec_CAF1 121 102 + 1
UGAGCGCUUUAGAGCUUUGCCGGCGUCUGGUAUUGCUCUCUAUUCUUUAAAUUUUUUUAAAGUAAGUAU-UAUUUCUCGUUCCUAGCACGCUAUCCUGGCAGC
.(((((....(((((..((((((...))))))..))))).....(((((((....))))))).......-.......))))).......(((.....)))... ( -24.50)
>DroSim_CAF1 121 102 + 1
UGAGCGCUUUAGAGCUUUGCCGGCGUCUGGUAUUGCUCUCUAUUCUUUAAAAUUUUUUAAAGUAACUAU-UAUUUCUCGUUUCUAGCACGCUAUCAUGGCAGC
...(((((..(((((..((((((...))))))..))))).....(((((((....))))))).......-..............)))..(((.....))).)) ( -22.70)
>DroEre_CAF1 121 100 + 1
UGAGCGCUUCAGAGCUUUGCCGGCGUCUGGUAUUGCUCUCUAUUGUUUAAACCUUUUU-AAGUGACUAU-UA-UCAUUUUUUUUAGCACGCUAUCAUGGCAGC
((((((.(..(((((..((((((...))))))..)))))..).)))))).........-..(((.(((.-.(-.......)..))))))(((.....)))... ( -24.00)
>DroYak_CAF1 121 90 + 1
UGAGUGCUUUAGGGUUUUGCCGGCGUCUGGUAUUGCUCCUAAUUCUUUAAAAACUUUU-AU------------UCCAUGUUUCUAGCACGCUAUCCUGGCAGC
...((((((((((((..((((((...))))))..)).)))))........((((....-..------------.....))))..)))))(((.....)))... ( -22.30)
>DroAna_CAF1 121 86 + 1
UAAGUGCCAAAAAG-----CCGGCGUCUGGUCUUGUUUU-UGUCGCUUAACCC-----------ACUCUCUCCCUCCCCCUUGCAGUACGCUUUCCUGGCAGC
((((((.(((((((-----((((...)))))....))))-)).))))))....-----------.........................(((.....)))... ( -15.50)
>consensus
UGAGCGCUUUAGAGCUUUGCCGGCGUCUGGUAUUGCUCUCUAUUCUUUAAAAUUUUUU_AAGUAACUAU_UAUUUCUCGUUUCUAGCACGCUAUCCUGGCAGC
.....(((..(((((..((((((...))))))..)))))............................................(((....)))....)))... (-14.23 = -14.27 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:41 2006