Locus 3973

Sequence ID 2R_DroMel_CAF1
Location 13,104,357 – 13,104,477
Length 120
Max. P 0.821287
window6413

overview

Window 3

Location 13,104,357 – 13,104,477
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.28
Mean single sequence MFE -44.39
Consensus MFE -18.78
Energy contribution -20.07
Covariance contribution 1.28
Combinations/Pair 1.39
Mean z-score -2.28
Structure conservation index 0.42
SVM decision value 0.68
SVM RNA-class probability 0.821287
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13104357 120 - 20766785
CUGCCACUGCUGAGCGUCAACAACAUCUUCUCAACUCCGUGCAGCUGCUACUUCUCCUCCUGCCCGAAGAACAUCGUGAACUUCUUCAGCACAUCAUUGAGAUGCUGCAUGCUGUGGCCA
..(((((.(((((((((.....))....((((((....((((....((.............))..((((((..........)))))).))))....)))))).))).)).)).))))).. ( -31.22)
>DroVir_CAF1 8235 120 - 1
AGGCCACAUUAGAACGGCAGCAGCAUCUUCUUAACUCGGUGCAGUUGCUGUUACUGUUGUUGCCGGAGGAGCAUCGGGAGCUGUUACAGCAUAUCAUGGAAAUGUUGCACGCUGUUGCCC
.(((.(((.((((((((((((.(((((..........))))).))))))))).))).))).)))...((.(((.(((..((((...))))....(((....))).......))).))))) ( -42.10)
>DroPse_CAF1 7221 120 - 1
CGGCUACCGCAGAGCGCAAACGACAUCUUCUCAACUCGGUGCAGCUGCUUCUUCUCCUGCUCCCCGAAGAGCAUCGCGAGUUACUGCAGCACAUUAUUGAAAUGCUCCAUGCGGUGGCAG
..((((((((((((((((..(((............))).))).(((((.....(((((((((......)))))..).))).....))))).............))))..))))))))).. ( -44.70)
>DroGri_CAF1 10863 120 - 1
AGGCCAACUUGGAACGUCAGCAGCAUCUGCUGAGCUCGGUGCAGUUGCUACUGCUGCUGCUGCCGGAGGAGCAGCGUGAGUUGCUGCAACACAUCAUGGAAAUGCUGCACGCUGUGGCGC
..((((....((..(((..(((((((.(.((((..((((((((((.((....)).))))).))))).(.((((((....)))))).)......))).).).)))))))))))).)))).. ( -49.50)
>DroAna_CAF1 6601 120 - 1
CAGCUCCGGCGGAGCGGCAGCAGCAUCUGCUGAGCUCAGUCCAGUUGCUGCUGCUUUUAUUGCCCGAAGAGCAUCGGGAGCUGUUGCAGCACAUCAUUGAAAUGCUGCACGCCGUGGCUC
.(((..(((((.(((((((((((((.((((((....)))..))).)))))))))).......(((((......))))).)))..(((((((..((...))..))))))))))))..))). ( -60.10)
>DroPer_CAF1 7205 120 - 1
CGGCUACCGCAGAGCGCCAACGACAUCUUCUCAACUCGGUGCAGCUGCUCCUUCUCCUGCUCCCCGAAGAGCAUCGCGAGUUACUGCAGCACAUUAUUGAAAUGCUCCAUUCGGUGGCAG
..(((((((..((((((...(((............)))..)).(((((.....(((((((((......)))))..).))).....))))).............))))....))))))).. ( -38.70)
>consensus
CGGCCACCGCAGAGCGCCAACAACAUCUUCUCAACUCGGUGCAGCUGCUACUUCUCCUGCUGCCCGAAGAGCAUCGCGAGCUGCUGCAGCACAUCAUUGAAAUGCUGCACGCUGUGGCAC
..(((((((((.....................(((((...((.(.((((.((.(...........).)))))).))))))))..(((((((..((...))..)))))))))))))))).. (-18.78 = -20.07 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:40 2006