Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,103,737 – 13,103,853 |
Length | 116 |
Max. P | 0.526551 |
Location | 13,103,737 – 13,103,853 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.33 |
Mean single sequence MFE | -20.22 |
Consensus MFE | -11.82 |
Energy contribution | -12.95 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.05 |
Mean z-score | -1.80 |
Structure conservation index | 0.58 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13103737 116 - 20766785 CCUCUGCUAGUAAUUUCAAAAUUACUUGAAUUAAGGUUCAAAAUAUCUUGAAUCUAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUAUAGCCAAUGUUUAAGUUUGCACAU---- .....((((...(((((..(((((....(((((.(((((((......))))))))))))....)))))....((((....)))))))))...))))...(((........)))...---- ( -21.50) >DroSec_CAF1 7381 101 - 1 CUUCUGCUAGUAAUUUCAAAAUUACUUGAAAUAAGGUUCAGAAUAUCUUGAAUCCAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUAUAGCC---------------ACAU---- .....((((...(((((((......)))))))..(((((((......))))))).........(((......((((....)))).....))))))).---------------....---- ( -17.90) >DroSim_CAF1 3088 116 - 1 CCUCUGCUAGUAAUUUCAAAAUUACUUGAAUUAAGGUUCAUAAUAUCUUGAAUCUAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUUUAGCCAAUGUUUAAGUUUGCACAU---- .....(((((..(((((..(((((....(((((.((((((........)))))))))))....)))))....((((....)))))))))..)))))...(((........)))...---- ( -22.70) >DroYak_CAF1 3030 107 - 1 CCUCUGCUAGUAAUUUUAAAAUUACUUGAAUUAAGGUGAAAGUAAACUAAAAUCUUAUUGAUAUAGUUAAAAUUACGCAAGUAAGA-------------UGUUUAAUUUCACACAUACGA ......(.(((((((....))))))).).......((((((.(((((....(((.....)))..........((((....))))..-------------.))))).))))))........ ( -18.80) >consensus CCUCUGCUAGUAAUUUCAAAAUUACUUGAAUUAAGGUUCAAAAUAUCUUGAAUCUAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUAUAGCC__UGUUUAAGUUUGCACAU____ .....((((((((((....))))))........((((((((......))))))))........)))).....((((....)))).................................... (-11.82 = -12.95 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:39 2006