Locus 3971

Sequence ID 2R_DroMel_CAF1
Location 13,103,130 – 13,103,229
Length 99
Max. P 0.838958
window6411

overview

Window 1

Location 13,103,130 – 13,103,229
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -33.47
Consensus MFE -21.85
Energy contribution -23.27
Covariance contribution 1.42
Combinations/Pair 1.21
Mean z-score -1.69
Structure conservation index 0.65
SVM decision value 0.74
SVM RNA-class probability 0.838958
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13103130 99 - 20766785
UCGUCUUCGGACAGCAGCUCUAGCUGUGCGACCAGCGGUAGUAUCUCUGCUCCAGUCAGUCGACAGCAAUCGAAAGAAUCGCCUUCUGGCAAUGGAGCU
..(((....)))...((((((((((((.((((..((((.((((....)))))).))..)))))))))..((....))...(((....)))..))))))) ( -41.10)
>DroGri_CAF1 9075 87 - 1
U---CGUCGGAUGGCAGC---AGUUGUGGUGCCAACAGCAGCCACUCGGCGCCCGUCAGUCGCCAGCAAUCGCAUGAGUUGCCAG------CUGGGCCA
.---.((((..((((.((---.((((......)))).)).))))..))))((((((..((.((((((....)).)).)).))..)------).)))).. ( -33.30)
>DroSec_CAF1 6779 99 - 1
UCGUCAUCGGACAGCAGCUCUAGCUGUGCGACCAGCGGUAGUACCUCUGCUCCAGUUAGUCGACAGCAAUCGAAAGAAUCAACUUCUGGCAAUGGAGCA
..(((....)))....(((((((((((.((((.(((((.((((....)))))).))).)))))))))..((....))...............)))))). ( -33.90)
>DroSim_CAF1 2486 99 - 1
UCGUCAUCGGACAGCAGCUCUAGCUGUGCGACCAGCGGUAGUACCUCUGCUCCAGUUAGUCGACAGCAAUCGAAAGAAUCACCUUCUGGCAAUGGAGCA
..(((....)))....(((((((((((.((((.(((((.((((....)))))).))).)))))))))..((....))....((....))...)))))). ( -34.10)
>DroEre_CAF1 7348 96 - 1
UCGUCCUCGGACAGCAACUCUAGCUGUGCGACCAACGGUACUAUCUCUGCUCCAGUGAGUCGACAGCAAUCUAAAGAAUCACCUUCG---AAUGGGGGA
..(((....)))..........(((((.((((((..((..(.......)..))..)).)))))))))..............(((((.---...))))). ( -25.40)
>DroYak_CAF1 2416 90 - 1
UCGUCCUCGGACAGCAGCUCUAGCUGUGCGACCAGCGGUAGUAUAUCUGCUCCAGUCAGUCGACAGCAAUCGAAAGAAU------CG---GACGGGGGA
...((((((..(..........(((((.((((..((((.((((....)))))).))..)))))))))..((....))..------.)---..)))))). ( -33.00)
>consensus
UCGUCAUCGGACAGCAGCUCUAGCUGUGCGACCAGCGGUAGUAUCUCUGCUCCAGUCAGUCGACAGCAAUCGAAAGAAUCACCUUCU___AAUGGAGCA
..(((....)))....(((((((((((.((((..((((.((((....)))))).))..)))))))))..((....))...............)))))). (-21.85 = -23.27 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:38 2006