Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,102,487 – 13,102,586 |
Length | 99 |
Max. P | 0.646286 |
Location | 13,102,487 – 13,102,586 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -37.50 |
Consensus MFE | -22.68 |
Energy contribution | -22.02 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.26 |
Mean z-score | -2.10 |
Structure conservation index | 0.60 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13102487 99 + 20766785 CCAUGUUGCGAUAUACGCUGCUCUGUAGUAUCUGCUGA---UAGC------CCAGGCUCAUGGCGGGCAGCUCGUUGGAGCUGCCAUUGUUUUCCGAAAGUGUAUCAU .........((((((((((((...))))).(((((((.---.(((------....)))..)))))((((((((....))))))))..........))..))))))).. ( -34.70) >DroPse_CAF1 5565 99 + 1 CCAUGUUACGAUACACGCUGCUCUGGAGGAUCUGCUGG---UAGC------CCACGGUCAUCGCAGGCAGUUCAUUGGAGCUGCCAUUGGACUCUGAUAAUGUAUCGU .......((((((((.((((((..(.((...)).).))---))))------.((.((((......((((((((....))))))))....)))).))....)))))))) ( -34.90) >DroGri_CAF1 8399 108 + 1 CCAGAUUGCGAUAAACACUGCUCUGCAGCAGCUGCUGAUGGUAGCUGAUGUCCACGGUCAUGCCAGGCAGUUCAUUGGAGCUGCCAUUUACCUCGGACAAGGUGUCGU .......((((((....((((...))))(((((((.....))))))).(((((..((.....)).((((((((....)))))))).........)))))...)))))) ( -42.40) >DroYak_CAF1 1773 99 + 1 CCAUGUUGCGGUACACGCUGCUCUGUAGUAUCUGCUGA---UAGC------CCAGGUUCAUGGCGGGCAGCUCGUUGGAGCUGCCAUUGUUCUCUGAAAGUGUAUCGU .......(((((((((((((.((.((((...)))).))---))))------.((((..((.....((((((((....))))))))..))..).)))...))))))))) ( -39.60) >DroAna_CAF1 4956 99 + 1 CCAUGUUGCGGUACACACUGCUCUGGAGGAUCUGCUGG---UAGC------CCAUGCUCAUAGGGGGCAGUUCAUUGGAGCUGCCAUUGUUCUCCGACAGGGUGUCGU .......(((..((...(((.((.(((((((....(((---((((------((((((((.....)))))......))).)))))))..)))))))))))).))..))) ( -38.50) >DroPer_CAF1 5546 99 + 1 CCAUGUUACGAUACACGCUGCUCUGGAGGAUCUGCUGG---UAGC------CCACGGUCAUCGCAGGCAGUUCAUUGGAGCUGCCAUUGGACUCUGAUAAUGUAUCGU .......((((((((.((((((..(.((...)).).))---))))------.((.((((......((((((((....))))))))....)))).))....)))))))) ( -34.90) >consensus CCAUGUUGCGAUACACGCUGCUCUGGAGGAUCUGCUGA___UAGC______CCACGGUCAUGGCAGGCAGUUCAUUGGAGCUGCCAUUGUUCUCUGAAAAUGUAUCGU .......(((((((...................((((....))))....................((((((((....))))))))................))))))) (-22.68 = -22.02 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:37 2006