Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,102,196 – 13,102,288 |
Length | 92 |
Max. P | 0.500000 |
Location | 13,102,196 – 13,102,288 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -17.08 |
Energy contribution | -17.97 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.41 |
Mean z-score | -1.71 |
Structure conservation index | 0.65 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13102196 92 + 20766785 GCCAUUGCCAGCUAAGGCGGUAAGCAACAUCACCGGUUUUCGGGAUCGGGGAGUCAUGAUAGAUUCCUACAAUGUAAAA-CAAAUAUGUUGUA ...((((((......))))))..(((((((..((((((.....))))))((((((......))))))............-.....))))))). ( -27.30) >DroPse_CAF1 5337 85 + 1 GCCAUUGCCAGCCAAGGCAUUGAGCAGCAUAACGGGUUUGCGGGAGCGUGGCGUCAUAAUAGACUCCUGCAAUGAAA-U-CAGGUAU------ ((((.((((......)))).)).)).((.........((((((((((...))(((......))))))))))).....-.-...))..------ ( -24.57) >DroSec_CAF1 5830 92 + 1 GCCAUUGCCAGCUAAGGCGGUAAGCAGCAUCACCGGUUUCCGGGAUCGGGGAGUCAUAAUAGAUUCCUACAAUGUAAAA-CAAAUAUGUUGCA ...((((((......))))))..(((((((..((((((.....))))))((((((......))))))............-.....))))))). ( -29.60) >DroEre_CAF1 6329 93 + 1 GCCAUUGCCAGCUAAGGCAGUAAGUAGCAUCACCGGUUUUCGGGAGCGGGGAGUCAUAAUAGAUUCCUACAAUGUAAAAAAAAAUGUGCUGUA ...((((((......)))))).((((((.((.(((.....))))))).(((((((......)))))))..................))))... ( -25.10) >DroYak_CAF1 1549 92 + 1 GCCAUUGCCAGCUAAGGCAGUAAGCAGCAUCACCGGUUUUCGAGAGCGGGGAGUCAUAAUAGAUUCCUAUAACGUAAAA-CAAAUAUGUUGUA ...((((((......))))))..(((((((.....(((((((..(...(((((((......))))))).)..)).))))-)....))))))). ( -27.50) >DroPer_CAF1 5318 85 + 1 GCCAUUGCCAGCCAAGGCAUUGAGCAGCAUAACGGGUUUGCGGGAGCGUGGCGUCAUAAUAGACUCCUGCAAUGAAA-U-CAGGUAU------ ((((.((((......)))).)).)).((.........((((((((((...))(((......))))))))))).....-.-...))..------ ( -24.57) >consensus GCCAUUGCCAGCUAAGGCAGUAAGCAGCAUCACCGGUUUUCGGGAGCGGGGAGUCAUAAUAGAUUCCUACAAUGUAAAA_CAAAUAUGUUGUA ...((((((......))))))..(((((((.........(((....)))((((((......))))))..................))))))). (-17.08 = -17.97 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:36 2006