Locus 3968

Sequence ID 2R_DroMel_CAF1
Location 13,101,471 – 13,101,586
Length 115
Max. P 0.667556
window6408

overview

Window 8

Location 13,101,471 – 13,101,586
Length 115
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.75
Mean single sequence MFE -21.19
Consensus MFE -17.11
Energy contribution -17.28
Covariance contribution 0.17
Combinations/Pair 1.17
Mean z-score -1.45
Structure conservation index 0.81
SVM decision value 0.28
SVM RNA-class probability 0.667556
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13101471 115 - 20766785
AAAAGCUGCUAAUUACUUCUCCCGAGAAGUAUCCGGGCGAAACGGCCCUCUAGCUUUAAAUUGAGCUUUUCGCACAGAUAUAUAUAUAUAUUUUUUCAUAAU-CUAACGUUAAAAC
.(((((((.....(((((((....)))))))...((((......))))..)))))))....(((((.....))..(((((((....)))))))..)))....-............. ( -24.10)
>DroPse_CAF1 4588 105 - 1
AAAAGCUGCUUAUUACUUCUUCCGAGGAGUAUCCAGGCGAAACAGCCCUUUAGCCUUAAAUAGUACU---CGUAAA----UGUGUAGUUU----UUCAAAAUCCUAACGUUAAAAC
(((((((((...(((((((....)))((((((..((((.(((......))).))))......)))))---))))).----...)))))))----)).................... ( -18.50)
>DroSec_CAF1 5118 104 - 1
AAAAGCUGCUAAUUACUUCUCCCGAGAAGUAUCCGGGCGAAACGGCCCUCUAGCUUUAAAUUGAG-------CACAGAUAUAUAUAUAUA----UUCAUAAU-CUAACGUUAAAAC
.(((((((.....(((((((....)))))))...((((......))))..))))))).....((.-------....((((((....))))----)).....)-)............ ( -22.60)
>DroEre_CAF1 5612 107 - 1
AAAAGUUGCUAAUUACUUCUCCCGAGAAGUAUCCGGGUGAAACGGCCCUCUAGCUUUAAAUCGAGCUUUUCGCACACCUA----UGUAUU----UUCAUAAU-CUAACGUUAAAAC
.....(..((...(((((((....)))))))....))..)((((((.....(((((......)))))....)).....((----((....----..))))..-....))))..... ( -20.80)
>DroYak_CAF1 832 107 - 1
AAAAGCUGCUUAUUACUUCUCCCGAGAAGUAUCCGGGCGAAACGGCCCUCUAGCUUUAAAUCGAUCUUUUCGCACACCUA----UGUAUU----UUCAUAAU-CUAACGUUAAAAC
.(((((((.....(((((((....)))))))...((((......))))..)))))))....(((.....)))......((----((....----..))))..-............. ( -22.80)
>DroPer_CAF1 4577 105 - 1
AAAAGCUGCUUAUUACUUCUUCCGAGGAGUAUCCAGGCGAAACAGCCCUCUAGCCUUAAAUAGUACU---CGUAAA----UGUGUAGUUU----UUCAAAAUCCUAACGUUAAAAC
(((((((((...(((((((....)))((((((..((((..............))))......)))))---))))).----...)))))))----)).................... ( -18.34)
>consensus
AAAAGCUGCUAAUUACUUCUCCCGAGAAGUAUCCGGGCGAAACGGCCCUCUAGCUUUAAAUAGAGCU___CGCACA__UAU_U_UAUAUU____UUCAUAAU_CUAACGUUAAAAC
.(((((((.....(((((((....)))))))...((((......))))..)))))))........................................................... (-17.11 = -17.28 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:35 2006