Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,099,028 – 13,099,148 |
Length | 120 |
Max. P | 0.864180 |
Location | 13,099,028 – 13,099,148 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -41.81 |
Consensus MFE | -37.48 |
Energy contribution | -37.49 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.08 |
Mean z-score | -2.21 |
Structure conservation index | 0.90 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13099028 120 - 20766785 GUGGAAUCACUUGAUUGCUACAACAUGUUGGAACAUGUGUUGUUGCUGGAGUCGGGCUUUUAAUUAGCUGCUUUGGCUCUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUGCGCCGCCUC ..((((((((((((.....(((((((((......))))))))).((..((((..((((.......))))))))..))..)))))))))))).(((((.............)))))..... ( -42.62) >DroSim_CAF1 10219 120 - 1 GUGGAAUCACUUGAUUGCUACAACAUGUAGGAACAUGUGUUGUUGCUGGAGGCGGGCGUUUAAUUAGCUGCUUUGGCUCUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUGCGCCGCCUC ..((((((((((((..((.(((((((((......))))))))).))..(((.((((((((.....))).)).))).))))))))))))))).(((((.............)))))..... ( -42.12) >DroYak_CAF1 10520 115 - 1 AUAGAAUCGCUUGAUUGCUACAACAUGUAGGAACAUGUGUUGUUGGUGGAGGCGGGCGUUUAAUUAGCUGCUUUGGCUUUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUCUGCC----- ..((((((((((((..((((((((((((......))))))))).....(((((((.(.........)))))))))))..))))))))))))(((((.((.....)))))))....----- ( -40.70) >consensus GUGGAAUCACUUGAUUGCUACAACAUGUAGGAACAUGUGUUGUUGCUGGAGGCGGGCGUUUAAUUAGCUGCUUUGGCUCUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUGCGCCGCCUC .(((((((((((((..((((((((((((......))))))))).....(((((((.(.........)))))))))))..)))))))))))))(((((.............)))))..... (-37.48 = -37.49 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:34 2006