| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,078,773 – 13,078,874 |
| Length | 101 |
| Max. P | 0.901645 |
| Location | 13,078,773 – 13,078,874 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 70.56 |
| Mean single sequence MFE | -34.57 |
| Consensus MFE | -10.16 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.29 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13078773 101 + 20766785 GAAGACUGCCUGCUCAGCGGCUUCA---CACAGAAGGUGAAUCCGUUUCGCGAGAAAAGCUCCUGCAGCAUCCUGUAGAUU------------CGGAUACAUCAUGAUCCGGACCC ((((.((((.......)))))))).---.......((((.(((((((((....)))).....((((((....))))))...------------))))).))))............. ( -29.90) >DroPse_CAF1 3156 115 + 1 AACGACUCUCUGCUGAGCGGAUUCAACAGCCAAAACUUGAAUCCGUUCCGCGAGAAGAGCUCGUGCAGCAUCUUAUAAGUAUAAUUAUAAGUUCGAACU-GUGCCACCCCACACAC .((((((((((((.((((((((((((..........)))))))))))).)).)).)))).))))((((...(((((((......)))))))......))-)).............. ( -36.40) >DroEre_CAF1 2260 101 + 1 GAGGACUGCCUGCUCAGCGGCUUCA---CCCAGAAGGUGAAUCCGUUUCGCGAGAAGAACUCCUGCAGCAUCCUGUAGACU------------CGGAUAAAUCAUUAUCCGGACCC (((..((.(.(((..(((((.((((---((.....)))))).)))))..))).).))..)))((((((....))))))..(------------(((((((....)))))))).... ( -36.70) >DroYak_CAF1 2360 100 + 1 GAGGACUGUCUACUCAGCGGCUUCA---CUCAGAAGGUGAAUCCGUUUCGCGAAAAGAGCUCCUGCAGCAUCCUAUAGAUU------------CGGAUU-CUGAUGAUCCGGACCC .((((((((......(((((.((((---((.....)))))).)))))..((.......))....))))..)))).....((------------((((((-.....))))))))... ( -28.10) >DroAna_CAF1 2207 95 + 1 GAGGACUGCCUGUUGAGCGGCUUCA---CCCAGAAGGUGAAUCCCUUCCGUGAGAAGAGCUCCUGCAGCAUUUUGUAGGUC------------C------ACCAUCGGGUGGACCC ..(((.(((.(((.((((((.((((---((.....)))))).))(((.(....)))).))))..)))))).)))...((((------------(------(((....)))))))). ( -39.90) >DroPer_CAF1 3205 115 + 1 AACGACUCUCUGCUGAGCGGAUUCAACAGCCAAAACUUGAAUCCGUUCCGCGAGAAGAGCUCGUGCAGCAUCUUAUAAGUAUAAUUAUAAGUUCGAACU-GUGCCACCCCACACAC .((((((((((((.((((((((((((..........)))))))))))).)).)).)))).))))((((...(((((((......)))))))......))-)).............. ( -36.40) >consensus GAGGACUGCCUGCUCAGCGGCUUCA___CCCAGAAGGUGAAUCCGUUCCGCGAGAAGAGCUCCUGCAGCAUCCUAUAGAUU____________CGGAUU_AUCAUAAUCCGGACCC ...(.((((..((..(((((.((((............)))).)))))..))(((.....)))..)))))............................................... (-10.16 = -10.50 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:27 2006