Locus 3963

Sequence ID 2R_DroMel_CAF1
Location 13,077,871 – 13,077,970
Length 99
Max. P 0.638353
window6399

overview

Window 9

Location 13,077,871 – 13,077,970
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 76.28
Mean single sequence MFE -29.25
Consensus MFE -13.51
Energy contribution -13.45
Covariance contribution -0.06
Combinations/Pair 1.28
Mean z-score -1.97
Structure conservation index 0.46
SVM decision value 0.22
SVM RNA-class probability 0.638353
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13077871 99 + 20766785
GACAGGAAAGGAAACACCUGGCACUGAGAUCUGGACAAAUCCAGAACCGCUCCAAUCUCCACCAGGACCAGAUUUACCAAUAGAGCAGCGGAUGUCGGA
..((((...(....).))))...((((.(((((((....)))))).(((((.(....(((....))).....((((....))))).))))).).)))). ( -26.50)
>DroVir_CAF1 1414 93 + 1
GACGGGCAAAGAAACGCCCGGCACCGAGAUCUGGACAAAUCCGGAACCAG------CUGUUCCAGCAGCAGUGCUCCCAUUGGAGCAGCGCAUGUCUGA
(((((((........)))).((.......((((((....))))))....(------(((((((((.(((...)))....))))))))))))..)))... ( -36.10)
>DroGri_CAF1 1194 93 + 1
AACUGGCAAAGAAACGCCCGGCACCGAGAUCUGGACAAAUCCGGAACCCA------UCUUGGCUGCAGCGAUCUUACCGCUCGAGCAGCGUAUGUCAGA
..((((((((((..(((...(((((((((((((((....)))))).....------)))))).))).))).))))..((((.....))))..)))))). ( -33.60)
>DroEre_CAF1 1307 99 + 1
GACAGGAAAGGAAACACCAGGCACUGAGAUCUGGACAAAUCCAGAACCGCUUCAAUCUCCACCAGGACCGGAUUUACCAAUAGAGCAGCGAAUGUCAGA
((((((...(....).))..((.......((((((....))))))...((((.....(((....)))..((.....))....)))).))...))))... ( -23.10)
>DroYak_CAF1 1363 99 + 1
GACAGGAAAGGAAACACCUGGCACUGAGAUCUGGACAAAUCCAGAACCGCUUCAAUCUCCACCAGGACCAGAUCUACCAAUAGAGCAGCGAAUGUCAGA
((((((...(....).(((((....((((((((((....))))))..........))))..))))).)).(.((((....)))).)......))))... ( -26.60)
>DroMoj_CAF1 1062 93 + 1
CACGGGUAAGGAAACGCCCGGCACCGAAAUCUGGACAAAUCCGGAAUCAG------CUAUUCCAGCUGCCAUCCUACCAUUGGAGCAACGAAUGUCGGA
..(((((..(....))))))...((((..((((((....)))))).....------.(((((..(((.(((.........))))))...))))))))). ( -29.60)
>consensus
GACAGGAAAGGAAACACCCGGCACCGAGAUCUGGACAAAUCCAGAACCGC______CUCCACCAGCACCAGAUCUACCAAUAGAGCAGCGAAUGUCAGA
..((((..........))))((.(((...((((((....))))))............(((....))).............))).))............. (-13.51 = -13.45 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:26 2006