Locus 3962

Sequence ID 2R_DroMel_CAF1
Location 13,070,143 – 13,070,238
Length 95
Max. P 0.692568
window6398

overview

Window 8

Location 13,070,143 – 13,070,238
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -34.25
Consensus MFE -21.40
Energy contribution -20.77
Covariance contribution -0.63
Combinations/Pair 1.55
Mean z-score -1.85
Structure conservation index 0.62
SVM decision value 0.33
SVM RNA-class probability 0.692568
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13070143 95 - 20766785
GAAUCCGGGAUUGGGUAGCAGCGCUGGUGGUAUGGGUUGAUUGAAAGCAGUGGCCGCAGGUGGCGGUGGUG---GUGGAA-CUGGCAAUGCCACCGGUA
..(((((....)))))......(((((((((((..(((..((....((..(.(((((.....))))).)..---))..))-..))).))))))))))). ( -32.80)
>DroGri_CAF1 10280 98 - 1
AAAAUCCGGAUUGGGCAGCAGCGCUGGCGGAAUGGGUUGAUUGAAGGCAGUCGUUGCUGGCGGCGGCGGUGGUGGUGGCG-UUGGCAACGGUACGAUUG
..((((((..((.(.((((...)))).).)).))))))(((((....)))))(((((..(((.((.((....)).)).))-)..))))).......... ( -36.30)
>DroSim_CAF1 8803 95 - 1
GAAUCCGGGAUUGGGUAGCAGCGCUGGUGGUAUGGGUUGAUUGAAAGCAGUGGCCGCAGGCGGCGGUGGUG---GUGGAA-CUGGCAAUGCCACCGGUA
..(((((....)))))......(((((((((((..((((.((.(..((..(.((((....)))).)..)).---.).)).-).))).))))))))))). ( -33.00)
>DroEre_CAF1 8818 95 - 1
GAAUCCAGGAUUGGGCAGCAGUGCUGGUGGUAUGGGUUGAUUGAAAGCAGUGGCCGCAGGCGGCGGUGGUG---GUGGAA-CUGGCAAUGCCACCGGUA
...(((......)))......((((((((((((..((((.((.(..((..(.((((....)))).)..)).---.).)).-).))).)))))))))))) ( -32.20)
>DroYak_CAF1 8837 95 - 1
GAAUCCGGGAUUGGGUAGCAGUGCUGGUGGUAUGGGUUGGUUGAAAGCAGUGGCCGCUGGCGGUGGUGGUG---GUGGAA-CUGGCAAAGCCACCGGUA
..(((((....))))).....((((((((((....((..(((....((..(.(((((.....))))).)..---))..))-)..))...)))))))))) ( -34.50)
>DroMoj_CAF1 9279 96 - 1
AAAGUCCGGAUUGGGCAGCAGUGCUGGCGGUAUGGGCUGAUUGAAAGCAGUUGUUGCGGGCGGUAAUGGUGGAAGUGGUGC-CGGCAGCGGUGCAGG--
...((((.....)))).(((.(((((.((((((.((((.......))).(..(((((.....)))))..).....).))))-)).))))).)))...-- ( -36.70)
>consensus
GAAUCCGGGAUUGGGCAGCAGCGCUGGUGGUAUGGGUUGAUUGAAAGCAGUGGCCGCAGGCGGCGGUGGUG___GUGGAA_CUGGCAAUGCCACCGGUA
.....................(((..(((((....(((.......)))....)))))..))).((((((((...((.(....).))..))))))))... (-21.40 = -20.77 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:25 2006