| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,057,181 – 13,057,288 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 13,057,181 – 13,057,288 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.90 |
| Mean single sequence MFE | -28.65 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.37 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13057181 107 + 20766785 AACC-AAAU-----UCCUCAUAUACUCCUAGUUCGAAGGCUGUAUCGAGUUGGCCAUGCCCAAGGUUUUGGUGGGCUACAAACGGCCUUUGAUAGAUUCCGUCACGAACAUGC ....-....-----................(((((((((((((....((((.((((.(((...)))..)))).))))....))))))))((((.......))))))))).... ( -30.90) >DroGri_CAF1 10450 103 + 1 AAAU-GCAU-----UCC----AUCAUUCCAGUUUGAGGGAUGCAUCGAGCUGAACAUGCCCAAAGUGCUGGUGGGCUACAAGCGACCGUUAAUUGACUCGGUGACAAAUAUAU ..((-((((-----(((----.(((........))))))))))))...(((......(((((.........)))))....))).((((..........))))........... ( -28.60) >DroSim_CAF1 5869 107 + 1 AACC-AUAU-----UCCCCAUAUACUCCCAGUUCGAGGGUUGUAUCGAGUUGUCCAUGCCCAAGGUUUUGGUGGGCUACAAACGGCCGUUGAUAGAUUCCGUCACGAACAUGC ....-....-----................(((((.((..(.(((((((((((....(((((.........))))).....)))))..)))))).)..))....))))).... ( -25.10) >DroEre_CAF1 5952 103 + 1 AACU-AUAU-----CC----UUUACUGCAAGUUCGAGGGCUGUAUCGAGUUGGCCAUGCCCAAGGUUUUGGUGGGCUACAAACGGCCGUUAAUAGACUCCGUCACUAACAUGU ....-....-----..----......(((.(((.((.((((((....((((.((((.(((...)))..)))).))))....)))))).))....(((...)))...))).))) ( -25.70) >DroYak_CAF1 5832 104 + 1 AACCAAUAU-----CC----UUUACCUCAAGUUCGAGGGCUGCAUCGAGUUGGCCAUGCCCAAGGUUUUGGUGGGCUACAAGCGGCCCUUGAUAGACUCCGUCACGAACAUGU .........-----..----..........(((((((((((((....((((.((((.(((...)))..)))).))))....)))))))).....(((...))).))))).... ( -35.50) >DroAna_CAF1 5659 113 + 1 AUCUAAUAUGUAAUAAUCCUUUUACUUCCAGUUUGAAGGAUGCAUUGAGAUGGCCAUGCCCAAGGUCCUGGUUGGCUACAAACGUCCUUUAAUCGACUCCGUCACCAACAUGU .....((((((...................(.((((((((((..(((...((((((...(((......))).))))))))).)))))))))).)(((...)))....)))))) ( -26.10) >consensus AACC_AUAU_____UCC___UAUACUUCCAGUUCGAGGGCUGCAUCGAGUUGGCCAUGCCCAAGGUUUUGGUGGGCUACAAACGGCCGUUAAUAGACUCCGUCACGAACAUGU ..............................(((((..((((((....((((.((((.((.....))..)))).))))....)))))).......(((...))).))))).... (-21.42 = -21.37 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:22 2006