Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,374,154 – 2,374,295 |
Length | 141 |
Max. P | 0.879010 |
Location | 2,374,154 – 2,374,255 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 87.23 |
Mean single sequence MFE | -27.21 |
Consensus MFE | -22.67 |
Energy contribution | -21.27 |
Covariance contribution | -1.40 |
Combinations/Pair | 1.39 |
Mean z-score | -1.51 |
Structure conservation index | 0.83 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2374154 101 - 20766785 GGCCCCCUUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUAAGAAAGUGAUGGGGGUCAUCGGACUUAAUUCGUUUUCGUA (((((((.......(((((.((((..((((((((((..((.....))..)).))))).))).))))))))))))))))..((((.....))))........ ( -27.21) >DroSec_CAF1 23559 101 - 1 GGCCCCCCUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUUAGAAAGUGAUGGGGGUCAUCGGACAUAAUUCGUUUUCGUA (((((((.......(((((.((((...(((((((((..((.....))..)).))))).))..))))))))))))))))..((((.....))))........ ( -26.41) >DroSim_CAF1 23693 101 - 1 GGCCCCCCUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUUAGAAAGUGAUGGGGGUCAUCGGACAUAAAUCGUUUUCGUA (((((((.......(((((.((((...(((((((((..((.....))..)).))))).))..))))))))))))))))..((((.((.....)).)))).. ( -26.31) >DroEre_CAF1 23174 100 - 1 GGCCUCCUAAA-CAGUCGCAUUUCCGUUCGAAUUCCCGUGUUAAACACAGCAAAUUGAUGGAGAAAGUGACGGGGGUCAUCGGACUAAAUUCGUUUUCGUA (((((((....-..(((((.(((((((.(((.((.(.(((.....))).).)).))))))))))..))))))))))))..((((.....))))........ ( -27.20) >DroYak_CAF1 22525 101 - 1 GGCCCCCUUAAUAAGUCACAUCUGCCUGCAAAUUCUUGUGUCAAACAUAGCGAAUUCUGUAAGAAAGUGAUGGGGGUCACCGAAAUUAAUUCGUUUUCGUA (((((((.......(((((.(((...((((((((((((((.....))))).))))).)))))))..))))))))))))..(((((.........))))).. ( -28.91) >consensus GGCCCCCUUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUAAGAAAGUGAUGGGGGUCAUCGGACUUAAUUCGUUUUCGUA (((((((.......(((((.(((..(((.((.((((.(((.....))).)))).)))))..)))..))))))))))))..((((.....))))........ (-22.67 = -21.27 + -1.40)
Location | 2,374,175 – 2,374,295 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -32.69 |
Consensus MFE | -28.33 |
Energy contribution | -26.93 |
Covariance contribution | -1.40 |
Combinations/Pair | 1.31 |
Mean z-score | -1.62 |
Structure conservation index | 0.87 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2374175 120 - 20766785 GACAAUAGCUGAUAGAAUCGAUACUGUUCAUCCUAGCUGAGGCCCCCUUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUAAGAAAGUGAUGGGGGUCAU .....((((((((.((((.......)))))))..))))).(((((((.......(((((.((((..((((((((((..((.....))..)).))))).))).)))))))))))))))).. ( -33.51) >DroSec_CAF1 23580 120 - 1 GACAAUAGCUGAUAGAAUUGAUACUGUUCAUCCUAGCUGAGGCCCCCCUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUUAGAAAGUGAUGGGGGUCAU .....((((((((.((((.......)))))))..))))).(((((((.......(((((.((((...(((((((((..((.....))..)).))))).))..)))))))))))))))).. ( -33.51) >DroSim_CAF1 23714 120 - 1 GACAAUAGCUGAUAGAAUUGAUACUGUUCAUCCUAGCUGAGGCCCCCCUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUUAGAAAGUGAUGGGGGUCAU .....((((((((.((((.......)))))))..))))).(((((((.......(((((.((((...(((((((((..((.....))..)).))))).))..)))))))))))))))).. ( -33.51) >DroEre_CAF1 23195 119 - 1 GACAAUAGCUGAUAGAAUUGAUACCGUUCAUCCUGGCUGAGGCCUCCUAAA-CAGUCGCAUUUCCGUUCGAAUUCCCGUGUUAAACACAGCAAAUUGAUGGAGAAAGUGACGGGGGUCAU .....((((((((.((((.......)))))))..))))).(((((((....-..(((((.(((((((.(((.((.(.(((.....))).).)).))))))))))..)))))))))))).. ( -33.60) >DroYak_CAF1 22546 119 - 1 GACAAUAGCUGAUAGAAUUAAU-CCGUUCAUCCUAACUGAGGCCCCCUUAAUAAGUCACAUCUGCCUGCAAAUUCUUGUGUCAAACAUAGCGAAUUCUGUAAGAAAGUGAUGGGGGUCAC .....(((..(((.((((....-..)))))))))).....(((((((.......(((((.(((...((((((((((((((.....))))).))))).)))))))..)))))))))))).. ( -29.31) >consensus GACAAUAGCUGAUAGAAUUGAUACUGUUCAUCCUAGCUGAGGCCCCCUUAAUCAGUCACAUUUCCCUGCAAAUUGUCGUGUCAAACAUAGCGAAUUUAGUAAGAAAGUGAUGGGGGUCAU .....((((((((.((((.......)))))))..))))).(((((((.......(((((.(((..(((.((.((((.(((.....))).)))).)))))..)))..)))))))))))).. (-28.33 = -26.93 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:30 2006