Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,050,705 – 13,050,819 |
Length | 114 |
Max. P | 0.643237 |
Location | 13,050,705 – 13,050,819 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 89.07 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -19.21 |
Energy contribution | -19.61 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.72 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13050705 114 + 20766785 AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCCAGCCGAUGAUUACUCGAUGCAAUCGGUUUUGGCUUAUCGGCAA-CAAAUCGAUUGAUGCCUAAUUCUAAAAAAUCGGU ....(((((((........)))))))..(((....)))(((((((((((..((...((((((((((..(((....)))..-.)))))))))).))..))))).......)))))) ( -28.01) >DroSec_CAF1 21127 114 + 1 AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGUUUACUCAAUGCAAUCGGUUUUGGCUAAUCGGAAA-CAAAUCGAUUUCCGCCUAAUUAUGAAAAAUCGGU ....(((((((........)))))))(((....((.((((((((((.........)).)))))))).))...)))(....-)..((((((((...(........)..)))))))) ( -25.60) >DroSim_CAF1 20828 114 + 1 AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGAUUACUCGAUGCAAUCGGUUUUGGCUAAUCGGAAA-CAAAUCGAUUGCCGCCUAAUUCUGAAAAAUCGGU ....(((((((........)))))))..(((...))).(((((((((((..((..(((((((((((.((....))(....-))))))))))))))..))))).......)))))) ( -26.71) >DroEre_CAF1 22829 115 + 1 AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACUCCAGCCGAUGAUUAUUUAAUGCUAUCGUUUUUGGUUAAUCGGAAAAAAAAUCGAUUGCUGUAGACUUCUAAAAAAUCGGU ....(((((((........)))))))..(((....))).((((((((((...((((....))))..))))).))))).......(((((((....(((....)))...))))))) ( -24.60) >DroYak_CAF1 23487 114 + 1 AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGAUUAGUUAAUGCAAUCGUUUUUGGCUAAUCGGAAA-CAAAUCGAUUGCUCUUGACUUUUGAAAAAUCGGU ....(((((((........)))))))..(((...))).((((((....((((((.(((((((..((((.((....))...-)))).)))))))..))))))........)))))) ( -29.10) >consensus AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGAUUACUCAAUGCAAUCGGUUUUGGCUAAUCGGAAA_CAAAUCGAUUGCUGCCUAAUUCUGAAAAAUCGGU ....(((((((........)))))))(((....((.((((((((..............)))))))).))...))).........(((((((.................))))))) (-19.21 = -19.61 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:17 2006