Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,046,536 – 13,046,627 |
Length | 91 |
Max. P | 0.703302 |
Location | 13,046,536 – 13,046,627 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.71 |
Mean single sequence MFE | -19.42 |
Consensus MFE | -16.14 |
Energy contribution | -16.33 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.83 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13046536 91 + 20766785 AUUAAAUGGACAUUAU----CAUAAUAACAUUUCGUG---AGCUUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC .......(((...(((----((...........(...---.).......(((..(((((((......)))))))..))))))))..)))......... ( -21.90) >DroVir_CAF1 22631 93 + 1 GUUAGCCAAAU-----GAUUAUCAAAACAAACUCGUGCGCAACUUACCUCCGUAUGGCCGCCACGACACGGUCACCCGACGAUAUUUCCUUCGCAUAG ....((.((..-----((.((((.........(((((.((..(.(((....))).)...)))))))..(((....)))..)))).))..)).)).... ( -16.40) >DroSec_CAF1 16987 91 + 1 AUUAAAUGGACAUUAU----CUAAAUAUCAAUUAGUG---ACUUUACCUUCGUAUGGCCGCCAUUACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC .......(((......----...(((((((....(((---....)))..(((..(((((((......)))))))..)))))))))))))......... ( -20.10) >DroSim_CAF1 16715 91 + 1 AUUAAAUGGAUAUUAU----CUCAAUAUCAAUUAGUG---ACUUUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC ........((((((..----...)))))).....(((---(........(((..(((((((......)))))))..)))...........)))).... ( -20.91) >DroEre_CAF1 18747 90 + 1 AUUAAAUGAAUAGUUU-----UUAAUAACAAGCAGUG---ACCCUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC ............(((.-----.....))).....(((---(........(((..(((((((......)))))))..)))...........)))).... ( -18.11) >DroYak_CAF1 19300 91 + 1 AUUAAAUGGACAUUAU----UUGAAUAUCAAUCAGCG---CCCUUACCUUCGUAUGGCCGCCAUUACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC .......(((((....----.))(((((((.......---.........(((..(((((((......)))))))..)))))))))))))......... ( -19.09) >consensus AUUAAAUGGACAUUAU____CUCAAUAUCAAUUAGUG___ACCUUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC ..................................(((............(((..(((((((......)))))))..)))............))).... (-16.14 = -16.33 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:10 2006