Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,372,845 – 2,372,949 |
Length | 104 |
Max. P | 0.600165 |
Location | 2,372,845 – 2,372,949 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -16.08 |
Consensus MFE | -13.34 |
Energy contribution | -13.46 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.28 |
Structure conservation index | 0.83 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2372845 104 - 20766785 UUUAAAGACCCAAUGCACAGUUUCCUCCAACCCUUCUCCAACUGUUCAUAAAAAAAUUAUAUGCAAAGGUGAAGGGUUCUUCCCUAAAU-----------AAAUGU---UCUAUUCUA- .....(((......(((..((((.....((((((((.((...(((..((((.....))))..)))..)).)))))))).......))))-----------...)))---.....))).- ( -16.60) >DroSec_CAF1 22212 119 - 1 UUUAAAGACCAAUGACAUAGUUUCUUCCAAUCCUUCUCCAACUUCUCAUAAAAAACUGCUGUCCUAAGGAGAAGGGUUCUACCUUAAAUUAAACUUGACAAAAUGUUCUUCUAUUCUUU ...(((((.........((((((.....(((((((((((............................))))))))))).......)))))).....(((.....))).......))))) ( -15.89) >DroSim_CAF1 22342 119 - 1 UUUAAAGACCAAUGACACAGUUUCUUCCAAUCCUUCUCCAACUUCUCAUAAAAAACUGCUGUCCUAAGGAGAAGGGUUCUACCUUAAAUUAAACUUGACAAAAUGUUCUUCUAUUCUUU ...(((((.....((((((((((.............................)))))).))))...(((((((((......))))...........(((.....))))))))..))))) ( -15.75) >consensus UUUAAAGACCAAUGACACAGUUUCUUCCAAUCCUUCUCCAACUUCUCAUAAAAAACUGCUGUCCUAAGGAGAAGGGUUCUACCUUAAAUUAAACUUGACAAAAUGUUCUUCUAUUCUUU ............................(((((((((((............................)))))))))))......................................... (-13.34 = -13.46 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:28 2006