Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,029,258 – 13,029,360 |
Length | 102 |
Max. P | 0.993284 |
Location | 13,029,258 – 13,029,360 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -31.15 |
Energy contribution | -31.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.55 |
Structure conservation index | 0.80 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13029258 102 - 20766785 UGCGCUC----UGGUGACAACGCCCACUUUCC----CAAAAGUGGGCUGGUCUCUUCUGAUCAGA----------ACAUCGCUUCCGGAGCAGACACACCUGCAGGAACACUGUUGCGCG .((((..----.((((.....(((((((((..----..)))))))))..((((((((.((...(.----------....)...)).)))).)))).)))).((((.....)))).)))). ( -40.40) >DroSec_CAF1 12486 102 - 1 UGCGCUC----UGGUGACAACGCCCACUUUCC----CAAAAGUGGGCUGGUCUCUUCUGAUCAGA----------ACAUCGCUUCCGGAGCAGACACACCUGCAGGAACACUGUUGCGCG .((((..----.((((.....(((((((((..----..)))))))))..((((((((.((...(.----------....)...)).)))).)))).)))).((((.....)))).)))). ( -40.40) >DroSim_CAF1 8886 102 - 1 UGCGCUC----UGGUGACAACGCCCACUUUCC----CAAAAGUGGGCUGGUCUCUUCUGAUCAGA----------ACAUCGCUUCCGGAGCGGACACACCUGCAGGAACACUGUUGCGCG .((((..----.((((.....(((((((((..----..)))))))))(((((......)))))..----------...((((((...))))))...)))).((((.....)))).)))). ( -40.00) >DroAna_CAF1 8887 117 - 1 GAUGCUCAACAUGGUGACAACGCCCACUUUGCCACACAAAAGUGGGU-GG--CCUUCCGAUCGCGACGAGAAUCAAAAUGCUUUUCAACGCAGACACACCUGCAGGAACAAUAUCGCGCG ((.((......((....)).((((((((((........)))))))))-))--)..))....(((((.(((((.(.....).)))))...((((......))))..........))))).. ( -34.70) >consensus UGCGCUC____UGGUGACAACGCCCACUUUCC____CAAAAGUGGGCUGGUCUCUUCUGAUCAGA__________ACAUCGCUUCCGGAGCAGACACACCUGCAGGAACACUGUUGCGCG .((((......((....))..(((((((((........))))))))).((((......))))....................((((...((((......)))).)))).......)))). (-31.15 = -31.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:04 2006