| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,025,508 – 13,025,617 |
| Length | 109 |
| Max. P | 0.664881 |
| Location | 13,025,508 – 13,025,617 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.57 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -11.86 |
| Energy contribution | -12.53 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13025508 109 - 20766785 CUUGUUUUAUAUC---------UGGCACAGAAAUUAAUGUUUUAAAUUAAAUAAGUUAUUAGUUAAGCAUUAGUUAGUGCCAUUAAGCACGCCAUAUAUAUAUGUUGUAAUGU--UUGAU .......(((((.---------((((.....(((((((((((..((((((........))))))))))))))))).((((......)))))))).))))).............--..... ( -23.60) >DroSec_CAF1 5036 106 - 1 CUUGUUUUAUAUCCUCCAUUGCUGGCACAGAAAUUAAUGUUUUAAAUUAAAUU------------AGCAUUAGUUAGUGCCAUUAAACACGCUAUAUAUAUAUGUUGUGUUGU--UUGAU ......................((((((...((((((((((............------------)))))))))).))))))((((((((((.((((....)))).))).)))--)))). ( -23.80) >DroYak_CAF1 5094 107 - 1 CUACUUUUAUGUCUUCCUUUACUGGCACAGAAAUUAAUGUUUUAAAUGAAGUU------------AGCAAU-GUUAGUCCCAUUUAACAUGCUAUAUACAUAUAUUGUGCUCUUCGUGAU ..................((((.(((((((((((....)))))..(((....(------------((((.(-(((((......)))))))))))....)))....))))))....)))). ( -19.20) >consensus CUUGUUUUAUAUC_UCC_UU_CUGGCACAGAAAUUAAUGUUUUAAAUUAAAUU____________AGCAUUAGUUAGUGCCAUUAAACACGCUAUAUAUAUAUGUUGUGAUGU__UUGAU ......................((((((...((((((((((........................)))))))))).)))))).....((((.((((....)))).))))........... (-11.86 = -12.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:01 2006