Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,022,417 – 13,022,513 |
Length | 96 |
Max. P | 0.669489 |
Location | 13,022,417 – 13,022,513 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 84.65 |
Mean single sequence MFE | -39.47 |
Consensus MFE | -29.72 |
Energy contribution | -32.17 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.11 |
Mean z-score | -2.24 |
Structure conservation index | 0.75 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13022417 96 - 20766785 AGCUUAAAGGACAUAAACGAGGGUUGCUGCUGGGAGCUGGAAUCAUCGAUCAGUCGGUGGCCAACGGCUGGCGAAGAUUUGGCCUUGGCAGCGGUG (((((...(........)..)))))(((((..((.((..((.((.(((.(((((((........)))))))))).))))..))))..))))).... ( -37.80) >DroSec_CAF1 1944 96 - 1 AGCUUGAAGGACAUAAAGGAGGGCUGCUGCUGGGAGCUGGAGUCAUCGAUCAGUCGGUGGCCAACGGCUGGCGAAGAUUUGGCCUUGGCAGCGGUA ......................((((((((..((.((..((.((.(((.(((((((........)))))))))).))))..))))..)))))))). ( -41.90) >DroSim_CAF1 1940 96 - 1 AGCUUGAAGGACAUAAAGGAGGGCUGCUGCUGGGAGCUGGAGUCAUCGAUCAGUCGGUGGCCAACGGCUGGCGAAGAUUUGGCCUUGGCAGCGGUG ......................((((((((..((.((..((.((.(((.(((((((........)))))))))).))))..))))..)))))))). ( -41.90) >DroEre_CAF1 1890 96 - 1 AGCUUGAAGGACAUGAAGGAUGGCUGCUGCUGGGAGCUGGAAUCGUCGAUCAGUCGGUGGCCCACGGCUGGCGAGGAUUUGGCCUUGGCAGCGGUA ...........(((.....)))((((((((..((.((..((.((.(((.(((((((........)))))))))).))))..))))..)))))))). ( -44.10) >DroYak_CAF1 1914 96 - 1 AGCUUGAAGGACAUAAAGGAUGGCUGCUGCUGCGAGCUGGAAUCAUCGAGCAGACGGUGGCCCACGGCCGGCGAGGAUUUGGCCUUGGCAGCGGUG .....................(((..(((((((..(.((....)).)..)))).)))..)))(((.((.(.(((((......))))).).)).))) ( -35.00) >DroPer_CAF1 2214 87 - 1 AGCUUGAAGGAGUGGAACGACGGC---------GAGCUGGCCUCCUCUGCCAGGCGCUGGGCAAUCGCUGGCGACGACUUGGCCUUGGCGGCCGUG ((((((..(..(.....)..)..)---------)))))((((.((...(((((((((..(.......)..)))....))))))...)).))))... ( -36.10) >consensus AGCUUGAAGGACAUAAAGGAGGGCUGCUGCUGGGAGCUGGAAUCAUCGAUCAGUCGGUGGCCAACGGCUGGCGAAGAUUUGGCCUUGGCAGCGGUG ......................((((((((((((.((..((.((.(((.(((((((........)))))))))).))))..)))))))))))))). (-29.72 = -32.17 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:00 2006