Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,020,854 – 13,020,948 |
Length | 94 |
Max. P | 0.857137 |
Location | 13,020,854 – 13,020,948 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 75.00 |
Mean single sequence MFE | -26.18 |
Consensus MFE | -13.89 |
Energy contribution | -12.82 |
Covariance contribution | -1.06 |
Combinations/Pair | 1.33 |
Mean z-score | -2.14 |
Structure conservation index | 0.53 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13020854 94 - 20766785 AAGAAAGAA-GUAAUCACUUAUUUUUUUCUCUGCAUCAG-----GGAGC-UACAUCCUAUAUGAUAGUUUGUCAUCCUUACCUGUCGCGAGCGGUGCGCUG .((((((((-((((....))))))))))))..(((((((-----(((..-.(((..((((...))))..)))..)))))....(.(....))))))).... ( -24.90) >DroSec_CAF1 359 95 - 1 CAGAAAGGA-GUAAUCACUUCUUUUUUUCUGUGCACCUU-----AUAUCCUAUAUCCUUAGUGAUAGUUUGUCAUCCUUACCUGUCGCGAGCGGUGCGCUG .((((((((-((....))))))))))....(((((((..-----.(((((((......))).))))((((((.((........)).))))))))))))).. ( -28.80) >DroSim_CAF1 359 95 - 1 CAGAAAGGA-GUAAUCACUUCUUUUUUUUUGUGCACCUU-----AUAUCUUAUAUCCUUAAUGAUAGUUUGUCAUCAUUACCUGUCGCGAGCGGUGCGCUG .((((((((-((....))))))))))....(((((((..-----.(((((((......))).))))((((((...((.....))..))))))))))))).. ( -26.80) >DroYak_CAF1 359 101 - 1 UGAUAUGUAUAUAUGUACAUAUGUAUGUAGAUACACCUUGGGGUAUAUCCUACAAAGUCCUUGCUAGUUUGUAGUCCUUACCUGUCGCGAGCGGUGCGCUG ...(((((((((((....)))))))))))....((((...(((((....(((((((.(.......).)))))))....)))))(.(....))))))..... ( -24.20) >consensus CAGAAAGGA_GUAAUCACUUAUUUUUUUCUGUGCACCUU_____AUAUCCUACAUCCUUAAUGAUAGUUUGUCAUCCUUACCUGUCGCGAGCGGUGCGCUG ..(((((((.((....)).)))))))....(((((((...............(((.....)))...((((((.((........)).))))))))))))).. (-13.89 = -12.82 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:59 2006