Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,020,694 – 13,020,814 |
Length | 120 |
Max. P | 0.625028 |
Location | 13,020,694 – 13,020,814 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -42.89 |
Consensus MFE | -37.62 |
Energy contribution | -37.02 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.22 |
Mean z-score | -1.42 |
Structure conservation index | 0.88 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13020694 120 + 20766785 CGAUUUCUGGACCUCCGGCAAUCGCCUGGGCACGGGCAUGUUCCUAUGGAUGAGCACUGGUCUGCCGUUUAACGCCACUUUUGAUUUCUUCGAAAACUCGGCGGACGCCAUCCAGGCCGG .((((.((((....)))).))))(((((((....(((.(((((........)))))...((((((((...........((((((.....))))))...))))))))))).)))))))... ( -45.14) >DroVir_CAF1 19312 120 + 1 UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCCACAUUUGACUUCUUCGAGAACUCGGCCGAUGCCAUCCAGGCCGG .(((((((((....)))))))))((((((((((((.(..((((...(((.(((((...((....)))))))...)))...((((.....))))))))..).))).)))...))))))... ( -41.70) >DroGri_CAF1 4715 120 + 1 UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCGACCUUUGAUUUCUUCGAGAAUUCGGCCGAUGCCAUCCAGGCUGG .(((((((((....)))))))))(((((....))))).....((..((((((.(((.(((.((..(((.....)))......((.(((.....))).))))))).)))))))))....)) ( -42.40) >DroWil_CAF1 2375 120 + 1 UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGUUUACCGUUCAAUGCCACCUUUGAUUUCUUUGAAAACUCGGCCGAUGCCAUUCAGGCUGG .(((((((((....)))))))))((((((((((((((((......((((.(((((....)))))))))...))))).((...(.((((...)))).)..)).)).))))...)))))... ( -39.60) >DroMoj_CAF1 4139 120 + 1 CGAUUUCUGGACCUCCGGAAAUCGUUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCAACAUUCGAUUUCUUCGAGAAUUCGGCCGAUGCCAUCCAAGCGGG .(((((((((....)))))))))(((((((....(((((...((...(((((.(((..((((....))))..)))..)))))((.(((.....))).))))...))))).)))))))... ( -42.40) >DroAna_CAF1 195 120 + 1 UGAUUUCUGGACAUCCGGCAAUCGCCUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGUCUGCCGUUCAAUGCCACCUUCGAUUUCUUCGAGAACUCGGCGGACGCCAUUCAGGCCGG .((((.((((....)))).))))((((((((.(((((.(((((....))))).)).)))(((((((((((..........((((.....))))))))..))))))))))...)))))... ( -46.10) >consensus UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCCACCUUUGAUUUCUUCGAGAACUCGGCCGAUGCCAUCCAGGCCGG .(((((((((....)))))))))(((((((....(((((((((........))))..(((....)))....)))))...(((((.....))))).....(((....))).)))))))... (-37.62 = -37.02 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:58 2006