Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,015,592 – 13,015,708 |
Length | 116 |
Max. P | 0.968885 |
Location | 13,015,592 – 13,015,708 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 73.96 |
Mean single sequence MFE | -16.77 |
Consensus MFE | -6.51 |
Energy contribution | -8.14 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.06 |
Mean z-score | -3.07 |
Structure conservation index | 0.39 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13015592 116 + 20766785 AAGUGUAUUCUGUAUCAAAA---CUAAUCAUCUAGUUAUCAUACCAGAUCACUGACCCACAUAUCUAUGAUCCAUCUACACAAAAAUAUUAUAGAGAAAAACCAUAGAUACAGAAAUCA .......(((((((((....---.........((((.(((......))).)))).........((((((((................))))))))...........))))))))).... ( -19.89) >DroSec_CAF1 29325 117 + 1 AAAUGAAUCCUGUAUCAAAUCAUCUAAUCAUUCAGUUAUCAUACUUAACCAUUGACCCACAUAUCUGUGUUCCAUCUACACA--UAUAUUUUACAGAAAACCCAUAGAUACAGAAAUCA ...(((...(((((((...........(((....((((.......))))...))).....((((.(((((.......)))))--.)))).................)))))))...))) ( -17.00) >DroSim_CAF1 25708 114 + 1 AAAUGCAUCCUGUAUCAAAA---GUAAUCAUCCAGUUAUCAUACUUAACCAAUGACCCACAUAUCUGUGUUCCAUAUACAUA--AAUAUUUUACAGAAAAACCAUAGAUACAGAAAUCU .........(((((((....---((..((((...((((.......))))..))))...))...((((((....((((.....--.))))..)))))).........)))))))...... ( -17.80) >DroEre_CAF1 25215 100 + 1 -AAAGCAUCCCGUUUCCAAA---UU-ACCAUCCAGUUAU---ACUCAGCCACUGACCCACAUAUCUGUGUUCUAUCUACAAA--A---------AUCGAGAUCAUACACAAUGGAAUAA -............(((((..---..-......((((...---........))))...........(((((...((((.(...--.---------...)))))...))))).)))))... ( -12.40) >consensus AAAUGCAUCCUGUAUCAAAA___CUAAUCAUCCAGUUAUCAUACUUAACCACUGACCCACAUAUCUGUGUUCCAUCUACACA__AAUAUUUUACAGAAAAACCAUAGAUACAGAAAUCA .......(((((((((..................((((..............)))).((((....)))).....................................))))))))).... ( -6.51 = -8.14 + 1.63)
Location | 13,015,592 – 13,015,708 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.96 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -15.15 |
Energy contribution | -15.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.35 |
Mean z-score | -2.24 |
Structure conservation index | 0.56 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13015592 116 - 20766785 UGAUUUCUGUAUCUAUGGUUUUUCUCUAUAAUAUUUUUGUGUAGAUGGAUCAUAGAUAUGUGGGUCAGUGAUCUGGUAUGAUAACUAGAUGAUUAG---UUUUGAUACAGAAUACACUU (((((..(((((((((((((..(((.(((((.....))))).)))..)))))))))))))..)))))(((.((((.(((.(.((((((....))))---)).).))))))).))).... ( -35.60) >DroSec_CAF1 29325 117 - 1 UGAUUUCUGUAUCUAUGGGUUUUCUGUAAAAUAUA--UGUGUAGAUGGAACACAGAUAUGUGGGUCAAUGGUUAAGUAUGAUAACUGAAUGAUUAGAUGAUUUGAUACAGGAUUCAUUU (((.(((((((((...(((((.(((.....((((.--(((((.......))))).))))...(((((..(((((.......)))))...)))))))).)))))))))))))).)))... ( -25.70) >DroSim_CAF1 25708 114 - 1 AGAUUUCUGUAUCUAUGGUUUUUCUGUAAAAUAUU--UAUGUAUAUGGAACACAGAUAUGUGGGUCAUUGGUUAAGUAUGAUAACUGGAUGAUUAC---UUUUGAUACAGGAUGCAUUU .(..(((((((((...(((...(((((...(((((--((.....((((..((((....))))..))))....)))))))....)).))).....))---)...)))))))))..).... ( -26.80) >DroEre_CAF1 25215 100 - 1 UUAUUCCAUUGUGUAUGAUCUCGAU---------U--UUUGUAGAUAGAACACAGAUAUGUGGGUCAGUGGCUGAGU---AUAACUGGAUGGU-AA---UUUGGAAACGGGAUGCUUU- ....((((((((((...(((((((.---------.--.))).))))...))))))....((.(.((((...)))).)---...)))))).(((-(.---((((....)))).))))..- ( -20.60) >consensus UGAUUUCUGUAUCUAUGGUUUUUCUGUAAAAUAUU__UGUGUAGAUGGAACACAGAUAUGUGGGUCAGUGGUUAAGUAUGAUAACUGGAUGAUUAG___UUUUGAUACAGGAUGCAUUU ....(((((((((................................(((..((((....))))..))).(.(((.(((......))).))).)...........)))))))))....... (-15.15 = -15.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:54 2006